Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00879 ATGGGGCGTGTGAAATTGGAGATAAAAAGAATAGAGAATACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCATATGAGTTATCCATCCTTTGTGACATTGATATTGCACTTATCATGTTCTCTCCCTCTGGTCGTCTCAACCATTTCTCTGGCAAAAGGAGGATTGAAGATGTTTTCACACGTTACATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAATTTTCCTGAGCCACACTATGGCAGGTATATATATAACAAAGAGTATTTGCTCCGGACCCTTCAACAATTGAGGAATGAGAATGACATAGCTCTTCAACTAGCCAATCCGGGAGTCATTAACTCTGAGATTGAAGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAACTGGCTGAAGACCAGATAAGGGCATATGAACCCGATCCATTAAAGATGACATCTATGGAGGAGCTGGAATCTGGTGAAAAGAATCTTATGGAGACTTTGACTCGCGTCATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTGCCTACTTATGATCCATCAACTATTCAGGGGATGGCATCAACTTTTGAGAATGTCGGATGGTTGCAAAATGGCACCCAAAACCACAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCGTCAATTTATGATCCATTTCCACAAGGAACAAATTCACAAAGCGATACAAGAAACATTGGAGAGTGTCACGTGACAAATCAGAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATATGCAGCATGAGATGGTGGGACCTGACGTGTCCAATATGATGACGACACATGGACAAATGAATCTTCCAATCACAGCCTCCAATTTGCAACCATCCAACAATGAAGCCGGAGAATATGACTGTTCGAAAGATGTGGTGGTAGAGCTATTTGATATGCCACCTTCCTGA 993 0.4089 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGKRRIEDVFTRYINLPDQERDNAVNFPEPHYGRYIYNKEYLLRTLQQLRNENDIALQLANPGVINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLMETLTRVMQRKEYLLSSHLPTYDPSTIQGMASTFENVGWLQNGTQNHNQIFDASTPLDPLRDLQSSIYDPFPQGTNSQSDTRNIGECHVTNQNDTWPQGYTLYSHMQHEMVGPDVSNMMTTHGQMNLPITASNLQPSNNEAGEYDCSKDVVVELFDMPPS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00879 330 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 224 - -
Arst8g00879 330 Pfam K-box region 125 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst8g00879 330 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Arst8g00879 330 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Arst8g00879 330 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 FunFam MADS-box transcription factor 41 13 91 - -
Arst8g00879 330 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst8g00879 330 Coils Coil 126 146 - -
Arst8g00879 330 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00879 Arst-Chr8 12046052 12055989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00879 1 315 Type I MADS-box Gene Family AT1G22130 56.839 3.01e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst8g00879 K-box 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00879 - - ahf:112708330 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00879 8 12046052 12055989 Arst8g00879 8 12046052 12055989 ECH