LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g00837	ATGGCACAAACGCTAGCAATGCCCGTATCTCCCTCCCTCGCCCTAATCTCAAACCCTAAACCTCTTTCGAGAACCGTCTCCTTCCCCGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGCGGAGTGGAAATTCCGAACAACAAGAGGATCGAGTTCTCCTTACAGTACATCCATGGAATCGGGAGAAGCAGAGCTCGCAAGATTCTCTGCGATATTAGCATGGACAACAAGGTCACTAAGGATCTCAGCGAAGAGGAACTCATCACTCTTAGGGATGAAGTCTCCAAATACGTCATTGAAGGCGATTTGAGGAGGTTTAATGCGTTGAATATAAGGAGACTGAAGGAGATTCAGTGCTACCGAGGAATAAGGCATATTCAGGGTCTTCCTTGCCGAGGACAACGTACAAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTGA	492	0.4797	MAQTLAMPVSPSLALISNPKPLSRTVSFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g00837	163	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	39	161	-	-
	Arst8g00837	163	NCBIfam	30S ribosomal protein S13	45	154	IPR019980	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00837	163	Gene3D	-	44	112	-	-
	Arst8g00837	163	Pfam	Ribosomal protein S13/S18	45	149	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00837	163	SUPERFAMILY	S13-like H2TH domain	44	155	IPR010979	GO:0003676
	Arst8g00837	163	Gene3D	30s ribosomal protein s13, domain 2	113	163	IPR027437	-
	Arst8g00837	163	Hamap	30S ribosomal protein S13 [rpsM].	43	159	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00837	163	FunFam	30S ribosomal protein S13	113	162	-	-
	Arst8g00837	163	FunFam	30S ribosomal protein S13	39	112	-	-
	Arst8g00837	163	ProSiteProfiles	Ribosomal protein S13 family profile.	46	152	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00837	163	ProSitePatterns	Ribosomal protein S13 signature.	128	141	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g00837	Arst-Chr8	11467949	11468870	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g00837	45	161	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	32.867	3.70e-08	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g00837	K02952		-	gmx:100499902	258.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst8g00837	8	11467949	11468870	Arst8g00837	8	11467949	11468870	ECH