Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00560 ATGTTATCCCTTTGTTCATTTTTGGTACCCCTTCTACTGCTGCTGGGGATCTCCTCATACGTTTTCAATAATATTTATGACTCCCGGTGGGATAGCGAGGTGGCAATTGATGCAAATAAAACAATGTGTTCATCCGGGTGGTGTGGGAGGCATGACATAAGGTACCCGTTCAGGCTGAATAATAGTAGTCCAAGCCACTGTGGTGAGCACAGGTACACCCTCTCTTGCGAGAATGATAACCAACTCTTTCTCTATCTCAAATCAATCAAGTTCCAAGTGCAGTCAATTAACTATAACAACTACACAATTCGACTAGTTGACGTCAATGTTCCCCTGCATACCCATAATCACTCTTCTCTCCCTAGTTATTCTTTGACCTCCTCCAACTTCACCAGAGATGATCCATATCAATATTGGTTCTATACACAGCATTTTAACGATGTTATTACATTAACAAAGCAGATGGTATATTTGATGAGGTACCCACCATATGGAGTAGAATCTTCTACTGCTGTTGCAAATTGCATGAATGGATCCTATGCACTTGGGAGTACATTCTATGTCAGTGATCTTGACAAGCGTCTCCAGGATTTGGCGTTCAGAGACTCATGTCATATAGATTGGATGTATTTGACTTCATGGCCTACTGAAATCAAGCAGATCAACATTTCATGCACAGACATCCATCATTTGCTGCTCTACGGGTTTGAACTTTCTTGGATGAAAGGATATTGCTATAATGACACAGACTTTGCCATTCTCGGTGATCATAACAACATCGTTTGTTATAACAATCATTACGAAAGATCTCCATTTGAAAATTATGTACTTTCATGGATTGTTATTTGTCTAATGAATGGAACGATATTATTTTTACTTGGCAAATTTGGACTTGGAGCTTTGTTCATCGTTATCTTCTGCATATGTAAATGGAGACGAAGACATTTATCCATATATGACAGTATTGAAGATTTTCTGCGAAGTGACAATAACATCATGCCAATTAGATACTCCTACAAAGAAATCAAGAACATAACTGGAAAGTTCAAGACTAAACTAGGAAATGGAGGCTATGGCTCTGTTTTTCAAGGAAAACTTCGAAGCGGTCGTCTTGTAGCTGTTAAGGTATTGAATAAGGCCAAATCCAATGGCCAGGAGTTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTGGTGCAACTCATTGGTTTCTGTGTGGAGGGATCAAAGCGTTGTTTGGTGTATGAGTTAATGCAAAATGGCTCTTTAGAAAAATACATATTTTCACCTCAAGAGAGTGCTTCAAATTCCTTAAGTTGTGAAAAACTGTACAATATTTCTCTTGGAGTGGCACGTGGTATTGAGTATCTGCATAATGGTTGTGACATTAAAATTTTGCACTTTGACATTAAGCCTCATAACATTCTTTTGGATGAGAAATTCAATCCAAAAGTCTCTGATTTTGGACTTGCAAGGCTTTATCCCACTGATAAAAGCATTGTGTCTCTGACCGCAGCAAGAGGAACCATAGGGTACATGGCTCCTGAGCTCTTCTATAGAAACGTTGGCACAATCTCATACAAAGCAGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCTAGTAGAAGGAAGAATTTGAATGCTTTGACTGAAAATTCCAGCCAAATTTATTTTCCTTTCTGGGTTTATGATCAATTACAAGATGGAAGGGAAATAACAATAGAAAATGACACAGATGAAGAGATGAAGTTGGCAAAGAAAATGATGATTGTGGCATTGTGGTGTATACATACAAAGCCTAATGATCGACCTTCAATGAAGAGAGTTGTGGAGATGCTAGAACAAGATGAAGACTTACTAGAAATGCCTCCTAAGCCTTACTTCTATCCACTTGATGAACCTGCAGACGAAGTCAGAGAAGAAAACAGTTCAAGGCTATTCTCTGTTATCTCATCAGTTACTGGTTCCAAAGAATAA 1995 0.3845 MLSLCSFLVPLLLLLGISSYVFNNIYDSRWDSEVAIDANKTMCSSGWCGRHDIRYPFRLNNSSPSHCGEHRYTLSCENDNQLFLYLKSIKFQVQSINYNNYTIRLVDVNVPLHTHNHSSLPSYSLTSSNFTRDDPYQYWFYTQHFNDVITLTKQMVYLMRYPPYGVESSTAVANCMNGSYALGSTFYVSDLDKRLQDLAFRDSCHIDWMYLTSWPTEIKQINISCTDIHHLLLYGFELSWMKGYCYNDTDFAILGDHNNIVCYNNHYERSPFENYVLSWIVICLMNGTILFLLGKFGLGALFIVIFCICKWRRRHLSIYDSIEDFLRSDNNIMPIRYSYKEIKNITGKFKTKLGNGGYGSVFQGKLRSGRLVAVKVLNKAKSNGQEFINEVATIGRIHHVNVVQLIGFCVEGSKRCLVYELMQNGSLEKYIFSPQESASNSLSCEKLYNISLGVARGIEYLHNGCDIKILHFDIKPHNILLDEKFNPKVSDFGLARLYPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALTENSSQIYFPFWVYDQLQDGREITIENDTDEEMKLAKKMMIVALWCIHTKPNDRPSMKRVVEMLEQDEDLLEMPPKPYFYPLDEPADEVREENSSRLFSVISSVTGSKE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00560 664 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Arst8g00560 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Arst8g00560 664 SMART serkin_6 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst8g00560 664 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Arst8g00560 664 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Arst8g00560 664 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Arst8g00560 664 FunFam PR5-like receptor kinase 422 631 - -
Arst8g00560 664 ProSiteProfiles Protein kinase domain profile. 347 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst8g00560 664 FunFam serine/threonine-protein kinase PBS1-like 319 421 - -
Arst8g00560 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 319 641 IPR045874 GO:0004672
Arst8g00560 664 Pfam Protein kinase domain 350 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst8g00560 664 Gene3D Phosphorylase Kinase; domain 1 326 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00560 Arst-Chr8 7956458 7971175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00560 34 649 Receptor kinase-like Gene Family AT5G38260 36.489 5.12e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Arst8g00560 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00560 - - aip:107607706 1020.76