Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00552 ATGCACCCATTTGCATTAAGGGAGGTGCATCCTACGGCTGAAACGCCACCACCCAAGTGCAGGTGCACCGAAGACAACACCCCCAAAGTAATAATACCGAAAGAAGCTAAGGTTAACCCAAACCCCAAAACCCAATTAACTCCAAACATGAACTTTCCCATAATCCTCCTCCTTCTTTTCTTCTTCTCCTTGAAGCCTCCTCAAAAACACGTTATTGTGTCATCAACCACACAAGACACATGCTTGGATGCTGTTTGCAATCTAAGGGAGCCAGTAATTCGATTCCCTTTCCAAATAGAACCAAACTCATCATCATCATCATGTGGGTACCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCATTCAGGAGGAGAGTTCAGCATCAAAGGGATAGACTACGACACTCAACAAGTGTGGGTAAACGACCCTGACAATTGCCTTCCAAAACGCATACTCTCTCTCAACCTCTCTTCATCCCCATTCGAAGCCGTTTACAACCAAGAATTCACGTTCTTCAACTGTTCCATGAACTTGGAGTATCTCAAGCATAGGTACAAACCCATAGCTTGTCTCAGTGATCCAAAGCACATGTTTTTTGCAACGTCTTCGTCAACCGTTGTTGTTTACTTGTCGTCGATTTGTAACGTGGTTAAGAGGGTGAAAGTGCCGGTTGGGGTGCCGTTTTACGAACATGTTGTGTCGTCTAACCTCAGCGATGATTTGAGGTTGTCGTGGGAATGGCCAGAGTGTGGGAGGTGTGAGTCACACGGTGGAAGATGTGGCTTTGAGAGCAACACCACTTCGCATGTTATGTGTTTCAACGATTTCCCTTCAAAAGGGTTTTCTCGTTGTGCACGATATGCAATAGCTATAGGCTTAGGAGTACCAGCATTATTGTGCTTCATTGGGATACTGAGTTGCCTGTGCAGCAAGCTCAAAATCTTAGCACACCGTTGGGTCTGGGACCGTCAAACTGTACCAGATTTCGAGCCCCTTATTAGCCCACAACCAACTATAATTTTGGGCCTAGATGGGCCAACTATTGAGTCGTACCCAAAAATGGTTGTGGGGGAGAGCCCAAATATTCTTCCGAAGCCCAATGACAACACATGCCCAATATGCTTGTCGGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGAATGTCTTCATTGCTTTCACGCTCAATGTATTGATGAGTGGCTTCCATTGAATGCTTCTTGCCCAATTTGCCGAACTTCTCCCAACAAGTTACCTGCAGCAGCTTAA 1296 0.4576 MHPFALREVHPTAETPPPKCRCTEDNTPKVIIPKEAKVNPNPKTQLTPNMNFPIILLLLFFFSLKPPQKHVIVSSTTQDTCLDAVCNLREPVIRFPFQIEPNSSSSSCGYPGFTVTCNNRGQTLLNLPHSGGEFSIKGIDYDTQQVWVNDPDNCLPKRILSLNLSSSPFEAVYNQEFTFFNCSMNLEYLKHRYKPIACLSDPKHMFFATSSSTVVVYLSSICNVVKRVKVPVGVPFYEHVVSSNLSDDLRLSWEWPECGRCESHGGRCGFESNTTSHVMCFNDFPSKGFSRCARYAIAIGLGVPALLCFIGILSCLCSKLKILAHRWVWDRQTVPDFEPLISPQPTIILGLDGPTIESYPKMVVGESPNILPKPNDNTCPICLSEYKPKETVKRIPECLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00552 431 Pfam Ring finger domain 377 421 IPR001841 -
Arst8g00552 431 MobiDBLite consensus disorder prediction 1 20 - -
Arst8g00552 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 426 IPR013083 -
Arst8g00552 431 SUPERFAMILY RING/U-box 374 424 - -
Arst8g00552 431 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 54 424 IPR046948 -
Arst8g00552 431 ProSiteProfiles Zinc finger RING-type profile. 379 421 IPR001841 -
Arst8g00552 431 Pfam Wall-associated receptor kinase galacturonan-binding 85 150 IPR025287 GO:0030247
Arst8g00552 431 Pfam Wall-associated receptor kinase C-terminal 220 282 IPR032872 -
Arst8g00552 431 SMART ring_2 379 420 IPR001841 -
Arst8g00552 431 CDD RING-H2_EL5-like 379 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00552 Arst-Chr8 7933858 7936914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00552 81 425 C3H Transcription Factor Family AT2G46495 35.920 7.97e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00552 - - adu:107460528 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00552 8 7933858 7936914 Arst8g00552 8 7933858 7936914 ECH