Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00488 ATGGAGAGAATGGTTTCTTCAATTCAAGGCTTACTTTTCTCCATAATCAACTGTCTTCAATTTTTTCCCCTAACTTCTCGGTCTAAGTACGGACAGATGATTTTTCTATCACAATTTCATTTTTCTTTAATCTCTCTTTTGTTTTCTGGGAGATTTTGTCAGCTTACCATTTTCCGAGAAAGTTCTGGGAAGACTCAGGTGGTCTTAAATATATTTGATACTGTCAAATTAACGAACGAGGTTGTGATTCAGAAGGAAAATTTCAACAAGTTCTCGAATCAGTTGGAGAAGATCTCTTCTATTTTGAAGTCTTTACCAATAGAGGATATAGAGAATCCTGAGAGCTTGAAAGATGCCTTGGATGTTCTCAACCAAGCTATTACGGTTGCTAAGCAGCTGGTTTTTGAGGGGCACGGTAGAAGTAAGATTTATGTTTTGATGAATTCGAGAAGGATGGTTGCACGTTTGAAATGCTGCGGAGAAGAAATAAGGCGAGCCCTGAGGCTGATTCCTCTTGCAAGCAAAGATATAAGCGAGATGTTAGATGTGGAGTATGAAGATGAAGACGAACAAGTTTTGGAAAAAGTTGAGGGTGCGATACAAGAGAGGAATTTGGATGGAACGTATGCGAATGAGTTGTTGTGTTGTATTGCAGATGCCATGGGTGTCCCGAAGGAGAGTGATGCGTTGAAGAGAGAATTCCAAGAGTTGAAACGCGAAATGGAAAGTGCACGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGAAGCTTATTGCAGTGCTTGAAAGGGCTGATTTGATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTAGGCAGGACCCCTTTAGAGCCTCTGCATTCATTTTACTGTCCAATCTCTGGAGATATTATGCTGGACCCTGTTGAAACTTCTTCTCGCAAGACATTCGAGAGAAGTGCAATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGTTGCCCCTCGACACTCGAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGTGGAAGGACAGGAATACAATCATCACCATTTCTACCATCAAGTCCCTGCTTGAAACAAATGAACAAGAGCAAGTGCTTGAATCCTTAGACAAGCTGCAGGATCTATGCTTAGAGAGACAGATACACCTAGAGTGGTTGAAAATGGAGAATTTCATAGCTCTTCTTATTGGACTTCTTGGTTCTAGAAACCGTGAAATAAGGAAGCGTGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATGACACAGACAACAAGCAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCACTTGCGCGTCAAATTGAGGAAAGCAAACTAGCATTGAAGTTGCTTTTGGAGTTATCCAAAACTAACATCTTGCTTCAACTCATAGGAAACGTTCAAGGAGGCATACTTCTAATAGTGACAATGTTAAATAGTGATGACGTTGAAGCAGCCAAAATTGCACATGAGCTTCTGGAGAACCTGTCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTACTGAACCTTTCCACAGGAGCAAAGAATGTGAAAATACTCATGGCCGAAACCGTGTCCGAAATTGAATTGACTGAGCAGAATAAATTGTCCTTAGTTAAAGATGGGGCAGTGAGACCTCTTCTTGGACTGCTCTTGGAAAATGATGTGGAAATCAAGAAAGTGGTTGTAAAGTGTTTACTTAAGCTGTCAAGCTTGCTGGAGAATGGCATGCTGATGATTAAGCAAGGTGTTACTCGACCGCTATTAGAGTTGCTATACTCTCACAGTTTACAGTCACCTGCTCTGCAGGAACTGATCGTTGCAACAATAATGCATCTTGCCATATCAACCACCCACCAACAAGCTGAAGAGGAACGTGTATTGTTGCTTGATTCGGAGGAACAAGTATATAAATTCTTCTCTCTGGTTTCTTTGACAGAACTTGATGTACAAAACATGATTCTCAAAGCCTTTCAGGCACTATGCCAGTCTCTCTCCGGCTTCACCATCAGAATGTGGTTGAGACAGATCTCGGCTGCTAAAGTATTGGTCCACTTGGTAGAGCTTAACACCCACGCAGTTCGGGTGAATGCCTTGAAGCTTTGTTATTGCTTGACAGAAGATGGTGACCACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGGTTTTGATGAACATCATCCAAGCTTCTGATGACGCTGAAGAGATGGTTGCTGCTATCGGCATCATCTCTAGACTACCAAAGGAGACACACATAACCGAGTGGCTTCTGGATTCTGGGGCACTTCAAACTATTTCGGCATGCCTTAAAGATCAGCATAAACATGCCTCACACAGAAAGCAAGTGACAGAGAATTCTGTCGAAGCCCTTGGTCGATTTACTGTGTCGGCAAATCCGGAGTGGCAGAAGAGAGTAGCTGAAGCAGGCATGATCCCGGTGTTGGTGCAATTGCTGGCTTCTGGAACACCTCTTTCAAAACAGAAGGCAGCTATTTCGATGAAGCAGCTTTCTGAAAGCTCATACTGCTTGAGCAAGCCGATAAAGAAGGCGAGCGTTTTGAAACGGTGCTTCACAGCACAGGAAACAGGGTGCCCAGCACATTTAGGTACATGTACGATAGAGTCTTCATTCTGCATGTTACAAGGGAAGGCCTTGGAACCCCTTGTGCGGATGCTCTCGGAACAAGACGTTGGAACATGCGAAGCATCTTTAGATGCTCTAATGACTTTGCTTGACGGCCAAACACATTATAGTGGAAGTAAGGTGCTGGTGGATGCAAACGCTGTTGCACCAATGATAAAGCTCTTGAGTGTTCCAGCTTCAAGGTTGCAGGAAAAAACTCTAACAGCATTAGGCCAAATCTTTCAACTTGATGAAGTGAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGACAGCCGTTTGAAAAGTCTTGCAGCTAAAGGCCTTGCTCAATTAGGTCTACTTGATAAACAATCTTCTTATTTTTAG 3120 0.4269 MERMVSSIQGLLFSIINCLQFFPLTSRSKYGQMIFLSQFHFSLISLLFSGRFCQLTIFRESSGKTQVVLNIFDTVKLTNEVVIQKENFNKFSNQLEKISSILKSLPIEDIENPESLKDALDVLNQAITVAKQLVFEGHGRSKIYVLMNSRRMVARLKCCGEEIRRALRLIPLASKDISEMLDVEYEDEDEQVLEKVEGAIQERNLDGTYANELLCCIADAMGVPKESDALKREFQELKREMESARSRKDVAEALRMEKLIAVLERADLITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIMLDPVETSSRKTFERSAIQRWFSQGNTLCPLTMLPLDTRILRPNKTLRHSIQEWKDRNTIITISTIKSLLETNEQEQVLESLDKLQDLCLERQIHLEWLKMENFIALLIGLLGSRNREIRKRVLLILSLLAKDDTDNKQGIAKVDGALRSIVHSLARQIEESKLALKLLLELSKTNILLQLIGNVQGGILLIVTMLNSDDVEAAKIAHELLENLSFLDQNVIEMAKANYLKPLLLNLSTGAKNVKILMAETVSEIELTEQNKLSLVKDGAVRPLLGLLLENDVEIKKVVVKCLLKLSSLLENGMLMIKQGVTRPLLELLYSHSLQSPALQELIVATIMHLAISTTHQQAEEERVLLLDSEEQVYKFFSLVSLTELDVQNMILKAFQALCQSLSGFTIRMWLRQISAAKVLVHLVELNTHAVRVNALKLCYCLTEDGDHRNISSHITERFIKVLMNIIQASDDAEEMVAAIGIISRLPKETHITEWLLDSGALQTISACLKDQHKHASHRKQVTENSVEALGRFTVSANPEWQKRVAEAGMIPVLVQLLASGTPLSKQKAAISMKQLSESSYCLSKPIKKASVLKRCFTAQETGCPAHLGTCTIESSFCMLQGKALEPLVRMLSEQDVGTCEASLDALMTLLDGQTHYSGSKVLVDANAVAPMIKLLSVPASRLQEKTLTALGQIFQLDEVRNKYKAMATMPLVDITQSKDSRLKSLAAKGLAQLGLLDKQSSYF 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00488 1039 SMART arm_5 951 991 IPR000225 GO:0005515
Arst8g00488 1039 SMART arm_5 604 647 IPR000225 GO:0005515
Arst8g00488 1039 SMART arm_5 563 603 IPR000225 GO:0005515
Arst8g00488 1039 SMART arm_5 480 521 IPR000225 GO:0005515
Arst8g00488 1039 SMART arm_5 833 873 IPR000225 GO:0005515
Arst8g00488 1039 SMART arm_5 784 830 IPR000225 GO:0005515
Arst8g00488 1039 SUPERFAMILY ARM repeat 368 521 IPR016024 -
Arst8g00488 1039 SUPERFAMILY ARM repeat 912 1033 IPR016024 -
Arst8g00488 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 368 IPR013083 -
Arst8g00488 1039 Gene3D - 369 466 IPR011989 -
Arst8g00488 1039 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Arst8g00488 1039 Gene3D - 901 1037 IPR011989 -
Arst8g00488 1039 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Arst8g00488 1039 Coils Coil 227 254 - -
Arst8g00488 1039 CDD RING-Ubox_PUB 297 346 IPR045210 -
Arst8g00488 1039 SUPERFAMILY ARM repeat 536 949 IPR016024 -
Arst8g00488 1039 Pfam U-box domain 297 363 IPR003613 GO:0004842|GO:0016567
Arst8g00488 1039 SUPERFAMILY RING/U-box 282 365 - -
Arst8g00488 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 66 1039 - -
Arst8g00488 1039 Gene3D - 467 897 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00488 Arst-Chr8 7008597 7012770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00488 295 1039 U-box Gene Family AT1G76390 26.092 1.96e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00488 - - gmx:100818273 1255.74