Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00452 ATGGCACAAGTTCAGGTGAGCCCCAATGCGAACGGTGATTCCGCCGCCGCCGCTGCTTTTGTCCCGAACCAGTCAGTGATGACGTCACTGTACGTTGGAGATCTCGACCGCAACGTCAAGGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGCCAGGTCGTCTCCGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTCGGTTACGGTTACGTCAATTTCAGTAACCCTCAAGACGCGGCAAGAGCATTGGATGTGTTGAATTTCACTCCGCTGAACAACAAACCGATTAGGATCATGTATTCTCATCGGGACCCTAGCTCCCGCACTAGCGGCGCTGCTAATATATTTATCAAGAATTTGGATAAGTCGATTGATCATAAGGCTCTGCATGATACTTTTTCCTCTTTTGGGACTATTCTTTCTTGCAAGATAGCCACAGATCCTTCTGGCCAGTCAAAAGGATTTGGCTTTGTGCAATTTGAGAAGGAAGAGTCTGCTCAAAATGCCATTGACAAGTTGAATGGAATGCTGATAAATGATAAACAGGTTTACGTGGGGCATTTTCAAAGAAAGCAGGATAGAGAGAGTGTCTTAAGCGCCAATACAAAATTTAGTAATGTGTATGTAAAGAACCTGTCAGAGTCCATGTCGGATGATAACTTGAAGAAAATTTTTGGGGAGTATGGGACAATTACTAGTGCTGTAGTGATGAGAGATTTAGACGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTCAATGGAAAGAAATTTGATGATAAGGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCCGAAAGGGAGCTTGCCCTGAAGGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATATCAAGGTGCTAACTTGTATCTCAAGAACTTGGATGATAGCATCGATGATGTAAAGCTCAGGGAACTCTTCTCAGATTTTGGTACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAGTCAGTAGAGGGTCTGGGTTTGTTGCATTTTCATCTCCTGAGGAAGCTACTCGAGCTCTCGGAGAAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGAAAGAAGAGCCAAGTTGCAGGCCCAGTTTTCTCAAATGACGCACGTATCAATGGCTCCTTCTGTTGCACCTCATCTCCCGCTCTATCCTCCAAGGGCCATGGGTCTTGGACATCCATTTTTGTATGGGCAAGCACCTCCAGCTGTCCTTCCTCAAGCTGGATTTGGTTATCAGCAGCAACTTGTGCCTGGGATGAGGCCAGGGGCTCCAATGCCAAGTTTCTTTGTTTGTCCGTCGAGGAACAGGTCCTGTGCAACAACCACAGCAGCCAGTGCCGATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCCATCGTTATCCAGGTGGTCGCAACATGCAGGAGGTTCCAATGCTTGCAGTCAACTATGACATGGGAGCTCTGCCCATCCGGGATGCGATGGGACAACCAATGCCCATTCAGGCCTTGGCTACTGCCCTTGCAAATGCTCCTCCAGGACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCACTTGTTGATAAGCTGGAACATGATGCTGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGATTGAGTCACCCGATGCTCTCAAGGCGAAAGTTGCCGAGGCCATGGACGTGTTGAAAAATGTTGCTCAGCAGCAAACCAATGCCCCAGCTGATCAACTCGCCTCCCTCTCTCTCAATGAGAATCTTGTCTCTTAG 1885 0.4764 MAQVQVSPNANGDSAAAAAFVPNQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSSRTSGAANIFIKNLDKSIDHKALHDTFSSFGTILSCKIATDPSGQSKGFGFVQFEKEESAQNAIDKLNGMLINDKQVYVGHFQRKQDRESVLSANTKFSNVYVKNLSESMSDDNLKKIFGEYGTITSAVVMRDLDGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELALKERFEQSMKEAADKYQGANLYLKNLDDSIDDVKLRELFSDFGTITSCKVMRDPHGVSRGSGFVAFSSPEEATRALGEMKGKLISGKPLYVALAQRKEERRAKLQAQFSQMTHVSMAPSVAPHLPLYPPRAMGLGHPFLYGQAPPAVLPQAGFGYQQQLVPGMRPGAPMPSFFVPVVQQGQQGQRPGVRRGTGPVQQPQQPVPMMQQQMLPRGRGHRYPGGRNMQEVPMLAVNYDMGALPIRDAMGQPMPIQALATALANAPPGQQRTMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVAQQQTNAPADQLASLSLNENLVS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00452 640 FunFam Polyadenylate-binding protein 294 399 - -
Arst8g00452 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Arst8g00452 640 Gene3D - 538 621 - -
Arst8g00452 640 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Arst8g00452 640 SMART rrm2_1 209 281 IPR003954 GO:0003676
Arst8g00452 640 SMART rrm2_1 312 384 IPR003954 GO:0003676
Arst8g00452 640 SMART rrm2_1 117 189 IPR003954 GO:0003676
Arst8g00452 640 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Arst8g00452 640 FunFam Polyadenylate-binding protein 200 293 - -
Arst8g00452 640 PANTHER RNA BINDING PROTEIN 23 90 - -
Arst8g00452 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Arst8g00452 640 CDD RRM2_I_PABPs 114 190 IPR045305 -
Arst8g00452 640 CDD RRM1_I_PABPs 29 108 IPR034364 -
Arst8g00452 640 FunFam Polyadenylate-binding protein 14 116 - -
Arst8g00452 640 SMART poly_2 554 617 IPR002004 GO:0003723
Arst8g00452 640 FunFam Polyadenylate-binding protein 538 620 - -
Arst8g00452 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Arst8g00452 640 SUPERFAMILY PABC (PABP) domain 491 631 IPR036053 GO:0003723
Arst8g00452 640 Gene3D - 2 115 IPR012677 -
Arst8g00452 640 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 619 IPR002004 GO:0003723
Arst8g00452 640 Gene3D - 308 411 IPR012677 -
Arst8g00452 640 FunFam Polyadenylate-binding protein 117 190 - -
Arst8g00452 640 Gene3D - 116 204 IPR012677 -
Arst8g00452 640 CDD RRM3_I_PABPs 207 286 - -
Arst8g00452 640 Gene3D - 205 307 IPR012677 -
Arst8g00452 640 Pfam Poly-adenylate binding protein, unique domain 550 614 IPR002004 GO:0003723
Arst8g00452 640 SMART rrm1_1 117 189 IPR000504 GO:0003723
Arst8g00452 640 SMART rrm1_1 29 102 IPR000504 GO:0003723
Arst8g00452 640 SMART rrm1_1 312 384 IPR000504 GO:0003723
Arst8g00452 640 SMART rrm1_1 209 281 IPR000504 GO:0003723
Arst8g00452 640 MobiDBLite consensus disorder prediction 472 495 - -
Arst8g00452 640 CDD RRM4_I_PABPs 310 388 - -
Arst8g00452 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Arst8g00452 640 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 615 IPR006515 GO:0003723
Arst8g00452 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Arst8g00452 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Arst8g00452 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Arst8g00452 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00452 Arst-Chr8 6519560 6522897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00452 24 639 Eukaryotic Initiation Factors Gene Family AT1G49760 67.247 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00452 K13126 - gmx:100784442 986.097