LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g00387	ATGGCTATCCGCGTAACCTTCTCCTTCTCCGGCTATGTCGCCCACAACCTTGTCTCCACCGCCACCTCCCGCATATCCAATTCCCGCTGCCTCCAAGAATGCTGGATCCATTCTCGCCTCTTCGGAGTTAGCCCAAAACATGACCGAGATCCCACCGCCGGTGTCCGAAGCTTCCATTCCGATCATCTCCGGCGGCCGAAGCTACGCAATCCTTGCGCCTACACCACCCTCGCCGGAGAGATTTTCGGCGATAACTGCAGCAACCCGATCGTCTTGGGCTTGATCTCCATGATGAAGTCAACGGTCGGAGTTTCTGGTTCGTCGTCGGCTTCCGTGGGTATTTTCGGTATTTCTCCCTTCAAGACCTCTTCCATCATACCTTTCTTGCAGGGTTCTAAGTGGCTTCCGTGTAACGAATCCGTCCCTAATCCTACCACCACAAACTGGGAGGTCGATAAGGGCGGAACGCTGTGTTCGGAGGAGGTGGCTGCTAGCGCTGTCTCCGCTGTTGAAGCTGGGAAGAGCAGGTGGCTCTCGCGGGTGTTGAACGTGTGTTCCGAGGATGCGAAGGCCGCGTTCACCGCCGTCACCGTTAGCTTGCTCTTCAAGTCCTTCTTGGCTGAACCTAGGTCTATTCCCTCTTCCTCTATGTACCCAACCCTCGAAGTCGGTGATCGCATTATGGCCGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTAATGTTTCAGATATAGTGATTTTTAAGGCACCTCCTGTTTTACAAGAATTTGGTTTCTCTTCCTCTGATGTGTTTATAAAAAGGGTTGTAGCTAAGGCTGGAGACACTGTTGAAGTTCGAGATGGTAAATTACTTGTGAATGGCGTTGCTGAAGAAGAGGAATTCATTTTAGAGCCTCTTGCTTATGAAATGGAATTAACGGTTGTGCCAGAAGGATATGTTTTTGTGTTAGGAGATAACCGTAATAACAGCTTTGACTCACATAACTGGTAA	990	0.499	MAIRVTFSFSGYVAHNLVSTATSRISNSRCLQECWIHSRLFGVSPKHDRDPTAGVRSFHSDHLRRPKLRNPCAYTTLAGEIFGDNCSNPIVLGLISMMKSTVGVSGSSSASVGIFGISPFKTSSIIPFLQGSKWLPCNESVPNPTTTNWEVDKGGTLCSEEVAASAVSAVEAGKSRWLSRVLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEVGDRIMAEKFSFFFRKPNVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKAGDTVEVRDGKLLVNGVAEEEEFILEPLAYEMELTVVPEGYVFVLGDNRNNSFDSHNW	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g00387	329	ProSitePatterns	Signal peptidases I signature 3.	313	326	IPR019758	GO:0004252\|GO:0016020
	Arst8g00387	329	FunFam	Peptidase/ serine-type peptidase	214	329	-	-
	Arst8g00387	329	Pfam	Signal peptidase, peptidase S26	189	329	IPR019533	GO:0004252\|GO:0006465
	Arst8g00387	329	CDD	S26_SPase_I	208	329	IPR019533	GO:0004252\|GO:0006465
	Arst8g00387	329	NCBIfam	signal peptidase I	192	329	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Arst8g00387	329	Gene3D	Umud Fragment, subunit A	214	329	-	-
	Arst8g00387	329	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	264	276	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Arst8g00387	329	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	308	327	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Arst8g00387	329	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	205	221	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Arst8g00387	329	ProSitePatterns	Signal peptidases I serine active site.	214	221	IPR019756	GO:0004252\|GO:0016020
	Arst8g00387	329	PANTHER	SIGNAL PEPTIDASE I	137	329	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Arst8g00387	329	SUPERFAMILY	LexA/Signal peptidase	204	329	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g00387	Arst-Chr8	5695045	5696796	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g00387	217	329	MADS-box Gene Family	AT1G29960	31.304	4.28e-08	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g00387	K03100		-	gmx:100817525	447.973

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst8g00387	8	5695045	5696796	Arst8g00387	8	5695045	5696796	ECH