Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00338 ATGGAAACTGGGGATGACAATAGCAATGCCGATAGCCCTGAACGTACGGCAGGGATGGAGGGGTGCTTGTATTCCGAAGCTGTAAATAATGGAGTGGTAATTGTTGATGGGAGTGGTCCTGATGAGAGCAAAGAAATTAGGCATTCGAAGAAGGAAGCTGTAAATACCAGAGTGTCAACTGCAGATGGGCGTTTTCGGACATACAAGAGGCGGAAACATGTAAAGATGAGTTGTTCAGAAAGCAAAGCTCAGGAAGAAAGCAGAGTGTGTGTGGAAGCCGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCATATGGTATAGCTGTAGGAAATACTTCAAAAGATAATTCAAATGGACATTGGGGGAATGTTGTACTAAATCATTTATATCATTCATTAGGCAATGATAACAGTGGCACAAAGTGGTGCATAAAGGAAGCACTGATGAGTAATCCAAAATCCATTACCGACATGGAAACTTCTAAAATTGACAAAGATGGCCAAGAATGCTCGTCACACTTCGACTGTTCCTCTCATAGGTTACAGTTTGAAGCTAATGGGCATGCATATGTCATGCATGGTGGATGTTCAAGTGAATCAGATGGCAATGGTCTTACTAAGAAGTGTCAGCGTGTGTTCCATAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTACTAGAAAATTTTCATGGAATGAAACCTGAAAGTGTAGTTGACTTTAGTGTCATAAATTCAAGGATGACAGAAGAAGCTTATGAACAATCACCCACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAAACACTGGAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACTTGTCAAGAGCGTATTACTTAGAGCATGTGGGAGTTCCTGGACACAGTTCATTTGAGGATCAAAAACAAGTGTTCCATAACTATGCATTGGACAATGTTATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATTGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGAAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTTGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAGCCTAAGTATAAGCTTGGTAAGAAATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTGGCTAGTAGCTAG 1833 0.4124 METGDDNSNADSPERTAGMEGCLYSEAVNNGVVIVDGSGPDESKEIRHSKKEAVNTRVSTADGRFRTYKRRKHVKMSCSESKAQEESRVCVEAASHFSEQAVKKPYGIAVGNTSKDNSNGHWGNVVLNHLYHSLGNDNSGTKWCIKEALMSNPKSITDMETSKIDKDGQECSSHFDCSSHRLQFEANGHAYVMHGGCSSESDGNGLTKKCQRVFHNILASEKFSSLCKVLLENFHGMKPESVVDFSVINSRMTEEAYEQSPTLFLSDFQQVWRKLENTGNEIVAIAKSLSNLSRAYYLEHVGVPGHSSFEDQKQVFHNYALDNVMRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCERLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSKPKYKLGKKWKQGRELEKDGGMDMLLTAANTLKFEENLASS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00338 610 ProSiteProfiles Zinc finger PHD-type profile. 338 388 IPR019787 -
Arst8g00338 610 SUPERFAMILY FYVE/PHD zinc finger 498 552 IPR011011 -
Arst8g00338 610 SUPERFAMILY FYVE/PHD zinc finger 437 498 IPR011011 -
Arst8g00338 610 ProSiteProfiles Zinc finger RING-type profile. 450 497 IPR001841 -
Arst8g00338 610 FunFam PHD finger protein EHD3 isoform A 228 389 - -
Arst8g00338 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 502 IPR013083 -
Arst8g00338 610 PANTHER OS02G0192300 PROTEIN 206 390 - -
Arst8g00338 610 SUPERFAMILY FYVE/PHD zinc finger 336 387 IPR011011 -
Arst8g00338 610 ProSiteProfiles Zinc finger PHD-type profile. 496 546 IPR019787 -
Arst8g00338 610 Gene3D - 240 388 - -
Arst8g00338 610 Pfam PHD-finger 499 544 IPR019787 -
Arst8g00338 610 Pfam PHD-finger 341 386 IPR019787 -
Arst8g00338 610 SMART PHD_3 449 498 IPR001965 -
Arst8g00338 610 SMART PHD_3 340 386 IPR001965 -
Arst8g00338 610 SMART PHD_3 499 544 IPR001965 -
Arst8g00338 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 566 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00338 Arst-Chr8 4827030 4837722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00338 498 565 C2H2 Transcription Factor Family AT3G01460 39.706 1.22e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst8g00338 PHD 6.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00338 - - aip:107609089 1185.24