Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00333 ATGCCTAGTGGTCAAACTTGGCAGGCATACATGAAATGCAGCAACTACCCTCTTAACTGGTGTGGAAAAGCTGAACAAACGAAAGAGGATAGAAGGAATGCTGATAATCCCTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCTAGTATCATGACTGATAATACTGCACCTAACATGGTATACAGGAGAAAAAAGCTACGTAAGGGGTTAAATGCTCCTCTTTCCAATTGCCGGTCAGTCATAAGTTCTTCTGTGCGTTTATCATCAGCTGAGGATCGGCCAGGTAGTTTCCAAGTTAAAGACCATTCTGAAATGATAAGAAATCTTGTTGTTTCTTCTGTGCTGTTGGATGGGGTAGTTAAAGATAACATTCAGAAAAGTTTAGGAATTGACAGTGTAAATGATAGTTGCTCTTCTTCAAAATCAAATATGGAACTTGTTTCAGATTCAGTAGAAACTGAAATTGATGAACCTGGTGAATGCTCCTCATCCAGTGCAATAGTTTTGGATGTTACAAGGGAAGCAAAGAGAGAAAAAGATTCTTGCATGAATATTCTAAGAAGCTATGGTCTTAGAGGAGATTGTTTTGCAGATAATGCTGCCTCTTTGGAAACTGTTGTTACTGCTGGTAATATCTGCTGTTCCAGATTGTGCAAAACATGTGGTAGGTTGGACAGTTCATTGAACATGCTTCTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTATAACCCACGTTTTAAAAAATTACCAACCGATGAGTGGTTTTGCCATTCATGTCTTACAAAAAGTCACAAAATTCTCAGAGAGACAATAATCAAATCACCAGGTATTCACAATGAACTGGGTAAATGTAGAACTGCTTCTGTTAAGGCAGAATTGAATCCCATACTGTTGATGCTGAGAGAAACTGAGCCATATACAACCAAGGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAGGGAAGTGATGAAGATGAACTTCCTGAACCGTTGGAAATAAATCATTCGGAGTTTTCAACACTGCAGGCAAGGAATCGAAGAAATCCAACTAGACTTGGTTCCATAGGAAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGACAATGGGACTGTGTGTGGAAAATGGCGCAGAGCTCCACTTTTTGAAGTTCAAGCTGATGATTGGGAGTGCTTCTGTGGTATCCATTGGGATCCATATCATGCTGATTGTGCCGTACCCCAGGAGCTCGAAACAGATCAAGTTCTAAAGCAGCTTAAGTATATAGAAATGCTAAGGCCTCAACTTACTGCCAAACAGAGAAAATCAGATTGCAATAGCAGTGGTGATTGA 1374 0.4039 MPSGQTWQAYMKCSNYPLNWCGKAEQTKEDRRNADNPCNSNCLSGLGQPSTASIMTDNTAPNMVYRRKKLRKGLNAPLSNCRSVISSSVRLSSAEDRPGSFQVKDHSEMIRNLVVSSVLLDGVVKDNIQKSLGIDSVNDSCSSSKSNMELVSDSVETEIDEPGECSSSSAIVLDVTREAKREKDSCMNILRSYGLRGDCFADNAASLETVVTAGNICCSRLCKTCGRLDSSLNMLLCDHCEDAYHPTCYNPRFKKLPTDEWFCHSCLTKSHKILRETIIKSPGIHNELGKCRTASVKAELNPILLMLRETEPYTTKVRVGKGFQAEVLGWLGPQGSDEDELPEPLEINHSEFSTLQARNRRNPTRLGSIGNWLQCQEIINRDNGTVCGKWRRAPLFEVQADDWECFCGIHWDPYHADCAVPQELETDQVLKQLKYIEMLRPQLTAKQRKSDCNSSGD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00333 457 ProSitePatterns Zinc finger PHD-type signature. 222 266 IPR019786 -
Arst8g00333 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 269 IPR013083 -
Arst8g00333 457 Pfam PHD-finger 222 268 IPR019787 -
Arst8g00333 457 SUPERFAMILY FYVE/PHD zinc finger 220 274 IPR011011 -
Arst8g00333 457 SMART PHD_3 221 267 IPR001965 -
Arst8g00333 457 Gene3D - 370 435 - -
Arst8g00333 457 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 217 277 IPR047171 GO:0006338
Arst8g00333 457 ProSiteProfiles Zinc finger PHD-type profile. 219 269 IPR019787 -
Arst8g00333 457 ProSiteProfiles Zinc finger CW-type profile. 366 426 IPR011124 GO:0008270
Arst8g00333 457 FunFam uncharacterized protein LOC106759733 isoform X4 370 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00333 Arst-Chr8 4763806 4769292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00333 221 267 C2H2 Transcription Factor Family AT3G01460 40.426 1.05e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst8g00333 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00333 - - gmx:100813057 639.417