Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00331 ATGAAATGCAGCAACTACCCTCTTAACTGGTGTGGAAAAGCTGAACAAACGAAAGAGGATAGAAGGAATGCTGATAATCCCTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCTAGTATCATGACTGATAATACTGCACCTAACATGGTATACAGGAGAAAAAAGCTACGTAAGGGGTTAAATGCTCCTCTTTCCAATTGCCGGTCAGTCATAAGTTCTTCTGTGCGTTTATCATCAGCTGAGGATCGGCCAGGTAGTTTCCAAGTTAAAGACCATTCTGAAATGATAAGAAATCTTGTTGTTTCTTCTGTGCTGTTGGATGGGGTAGTTAAAGATAACATTCAGAAAAGTTTAGGAATTGACAGTGTAAATGATAGTTGCTCTTCTTCAAAATCAAATATGGAACTTGTTTCAGATTCAGTAGAAACTGAAATTGATGAACCTGGTGAATGCTCCTCATCCAGTGCAATAGTTTTGGATGTTACAAGGGAAGCAAAGAGAGAAAAAGATTCTTGCATGAATATTCTAAGAAGCTATGGTCTTAGAGGAGATTGTTTTGCAGATAATGCTGCCTCTTTGGAAACTGTTGTTACTGCTGGTAATATCTGCTGTTCCAGATTGTGCAAAACATGTGGTAGGTTGGACAGTTCATTGAACATGCTTCTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTATAACCCACGTTTTAAAAAATTACCAACCGATGAGTGGTTTTGCCATTCATGTCTTACAAAAAGTCACAAAATTCTCAGAGAGACAATAATCAAATCACCAGGTATTCACAATGAACTGGGTAAATGTAGAACTGCTTCTGTTAAGGCAGAATTGAATCCCATACTGTTGATGCTGAGAGAAACTGAGCCATATACAACCAAGGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAGGGAAGTGATGAAGATGAACTTCCTGAACCGTTGGAAATAAATCATTCGGAGTTTTCAACACTGCAGGCAAGGAATCGAAGAAATCCAACTAGACTTGGTTCCATAGGAAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGACAATGGGACTGTGTGTGGAAAATGGCGCAGAGCTCCACTTTTTGAAGTTCAAGCTGATGATTGGGAGTGCTTCTGTGGTATCCATTGGGATCCATATCATGCTGATTGTGCCGTACCCCAGGAGCTCGAAACAGATCAAGTTCTAAAGCAGCTTAAGTATATAGAAATGCTAAGGCCTCAACTTACTGCCAAACAGAGAAAATCAGATTGCAATAGCAGTGGTGATTGA 1344 0.4018 MKCSNYPLNWCGKAEQTKEDRRNADNPCNSNCLSGLGQPSTASIMTDNTAPNMVYRRKKLRKGLNAPLSNCRSVISSSVRLSSAEDRPGSFQVKDHSEMIRNLVVSSVLLDGVVKDNIQKSLGIDSVNDSCSSSKSNMELVSDSVETEIDEPGECSSSSAIVLDVTREAKREKDSCMNILRSYGLRGDCFADNAASLETVVTAGNICCSRLCKTCGRLDSSLNMLLCDHCEDAYHPTCYNPRFKKLPTDEWFCHSCLTKSHKILRETIIKSPGIHNELGKCRTASVKAELNPILLMLRETEPYTTKVRVGKGFQAEVLGWLGPQGSDEDELPEPLEINHSEFSTLQARNRRNPTRLGSIGNWLQCQEIINRDNGTVCGKWRRAPLFEVQADDWECFCGIHWDPYHADCAVPQELETDQVLKQLKYIEMLRPQLTAKQRKSDCNSSGD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00331 447 Gene3D - 360 425 - -
Arst8g00331 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 259 IPR013083 -
Arst8g00331 447 ProSiteProfiles Zinc finger CW-type profile. 356 416 IPR011124 GO:0008270
Arst8g00331 447 FunFam uncharacterized protein LOC106759733 isoform X4 360 425 - -
Arst8g00331 447 Pfam PHD-finger 212 258 IPR019787 -
Arst8g00331 447 SUPERFAMILY FYVE/PHD zinc finger 210 264 IPR011011 -
Arst8g00331 447 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 207 267 IPR047171 GO:0006338
Arst8g00331 447 ProSitePatterns Zinc finger PHD-type signature. 212 256 IPR019786 -
Arst8g00331 447 ProSiteProfiles Zinc finger PHD-type profile. 209 259 IPR019787 -
Arst8g00331 447 SMART PHD_3 211 257 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00331 Arst-Chr8 4763806 4769292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00331 211 257 C2H2 Transcription Factor Family AT3G01460 40.426 1.07e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst8g00331 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00331 - - gmx:100813057 622.854