Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00329 ATGCTAATACAAAGTTCCCTTCTAAGTTCAGTTGAGGCTGGTTCATGTTATGTAACTGATGATGGAAAAGATATTCTTTGTGACCGGATGCCTAGTGGTCAAACTTGGCAGGCATACATGAAATGCAGCAACTACCCTCTTAACTGGTGTGGAAAAGCTGAACAAACGAAAGAGGATAGAAGGAATGCTGATAATCCCTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCTAGTATCATGACTGATAATACTGCACCTAACATGGTATACAGGAGAAAAAAGCTACGTAAGGGGTTAAATGCTCCTCTTTCCAATTGCCGGTCAGTCATAAGTTCTTCTGTGCGTTTATCATCAGCTGAGGATCGGCCAGGTAGTTTCCAAGTTAAAGACCATTCTGAAATGATAAGAAATCTTGTTGTTTCTTCTGTGCTGTTGGATGGGGTAGTTAAAGATAACATTCAGAAAAGTTTAGGAATTGACAGTGTAAATGATAGTTGCTCTTCTTCAAAATCAAATATGGAACTTGTTTCAGATTCAGTAGAAACTGAAATTGATGAACCTGGTGAATGCTCCTCATCCAGTGCAATAGTTTTGGATGTTACAAGGGAAGCAAAGAGAGAAAAAGATTCTTGCATGAATATTCTAAGAAGCTATGGTCTTAGAGGAGATTGTTTTGCAGATAATGCTGCCTCTTTGGAAACTGTTGTTACTGCTGGTAATATCTGCTGTTCCAGATTGTGCAAAACATGTGGTAGGTTGGACAGTTCATTGAACATGCTTCTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTATAACCCACGTTTTAAAAAATTACCAACCGATGAGTGGTTTTGCCATTCATGTCTTACAAAAAGTCACAAAATTCTCAGAGAGACAATAATCAAATCACCAGGTATTCACAATGAACTGGGTAAATGTAGAACTGCTTCTGTTAAGGCAGAATTGAATCCCATACTGTTGATGCTGAGAGAAACTGAGCCATATACAACCAAGGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAGGGAAGTGATGAAGATGAACTTCCTGAACCGTTGGAAATAAATCATTCGGAGTTTTCAACACTGCAGGCAAGGAATCGAAGAAATCCAACTAGACTTGGTTCCATAGGAAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGACAATGGGACTGTGTGTGGAAAATGGCGCAGAGCTCCACTTTTTGAAGTTCAAGCTGATGATTGGGAGTGCTTCTGTGGTATCCATTGGGATCCATATCATGCTGATTGTGCCGTACCCCAGGAGCTCGAAACAGATCAAGTTCTAAAGCAGCTTAAGTATATAGAAATGCTAAGGCCTCAACTTACTGCCAAACAGAGAAAATCAGATTGCAATAGCAGTGGTGATTGA 1461 0.4025 MLIQSSLLSSVEAGSCYVTDDGKDILCDRMPSGQTWQAYMKCSNYPLNWCGKAEQTKEDRRNADNPCNSNCLSGLGQPSTASIMTDNTAPNMVYRRKKLRKGLNAPLSNCRSVISSSVRLSSAEDRPGSFQVKDHSEMIRNLVVSSVLLDGVVKDNIQKSLGIDSVNDSCSSSKSNMELVSDSVETEIDEPGECSSSSAIVLDVTREAKREKDSCMNILRSYGLRGDCFADNAASLETVVTAGNICCSRLCKTCGRLDSSLNMLLCDHCEDAYHPTCYNPRFKKLPTDEWFCHSCLTKSHKILRETIIKSPGIHNELGKCRTASVKAELNPILLMLRETEPYTTKVRVGKGFQAEVLGWLGPQGSDEDELPEPLEINHSEFSTLQARNRRNPTRLGSIGNWLQCQEIINRDNGTVCGKWRRAPLFEVQADDWECFCGIHWDPYHADCAVPQELETDQVLKQLKYIEMLRPQLTAKQRKSDCNSSGD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00329 486 SUPERFAMILY FYVE/PHD zinc finger 249 303 IPR011011 -
Arst8g00329 486 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Arst8g00329 486 Pfam PHD-finger 251 297 IPR019787 -
Arst8g00329 486 ProSiteProfiles Zinc finger CW-type profile. 395 455 IPR011124 GO:0008270
Arst8g00329 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 298 IPR013083 -
Arst8g00329 486 SMART PHD_3 250 296 IPR001965 -
Arst8g00329 486 FunFam uncharacterized protein LOC106759733 isoform X4 399 464 - -
Arst8g00329 486 Gene3D - 399 464 - -
Arst8g00329 486 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Arst8g00329 486 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 246 306 IPR047171 GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00329 Arst-Chr8 4763770 4769292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00329 250 296 C2H2 Transcription Factor Family AT3G01460 40.426 1.35e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst8g00329 PHD 1.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00329 - - gmx:100813057 689.493