Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00315 ATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGCCGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAGTGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATTAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAATCTGGAACAGGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGCGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAGTCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACGGTCCCTCGGGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGGTTGAATTTGCTCTTCAAATATTAATGTGCCTGAATGTGTATAAGCTTCATGCTGAAATCCCCTTCTATAGCATTCACCAATACATGTGTAGTTGGGCACCTAAGAAGTTTTCCTTTTACCCTGTGGTTGTAACATGTTGTCTTCATTTCATATGTATCAGCTTTGTTCTCTGCTTGAAGAATAGGCAATATAAACCCGTGTTATGCAAGAAAAAGTATGCTTTCCTGCAGCAGCAACTGCAGCAGAACAACCGGAAAAGGAAACAACATTCTTCTTCTGGGCCTGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACAGGTGGCCTTGCATCGTCTTCTAATTTGCTTGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAATCATCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTACTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACGCATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACACTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACCGGTATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2529 0.4338 MKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLSAMNSEGMLGQQPTNVLAIKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTGHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKVEFALQILMCLNVYKLHAEIPFYSIHQYMCSWAPKKFSFYPVVVTCCLHFICISFVLCLKNRQYKPVLCKKKYAFLQQQLQQNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHTEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00315 842 Gene3D - 696 842 IPR015943 GO:0005515
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 810 842 IPR001680 GO:0005515
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 810 842 - -
Arst8g00315 842 MobiDBLite consensus disorder prediction 525 549 - -
Arst8g00315 842 PRINTS G protein beta WD-40 repeat signature 622 636 IPR020472 -
Arst8g00315 842 PRINTS G protein beta WD-40 repeat signature 580 594 IPR020472 -
Arst8g00315 842 PRINTS G protein beta WD-40 repeat signature 829 842 IPR020472 -
Arst8g00315 842 Coils Coil 88 108 - -
Arst8g00315 842 MobiDBLite consensus disorder prediction 428 476 - -
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 596 - -
Arst8g00315 842 Pfam WD domain, G-beta repeat 566 593 IPR001680 GO:0005515
Arst8g00315 842 Pfam WD domain, G-beta repeat 806 842 IPR001680 GO:0005515
Arst8g00315 842 Pfam WD domain, G-beta repeat 724 758 IPR001680 GO:0005515
Arst8g00315 842 Pfam WD domain, G-beta repeat 602 635 IPR001680 GO:0005515
Arst8g00315 842 CDD WD40 565 842 - -
Arst8g00315 842 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 842 IPR044716 GO:0003714
Arst8g00315 842 MobiDBLite consensus disorder prediction 302 319 - -
Arst8g00315 842 Gene3D - 559 695 IPR015943 GO:0005515
Arst8g00315 842 SMART WD40_4 596 635 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 639 679 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 803 842 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 762 801 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 682 718 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 721 759 IPR001680 GO:0005515
Arst8g00315 842 SMART WD40_4 554 593 IPR001680 GO:0005515
Arst8g00315 842 SUPERFAMILY WD40 repeat-like 559 842 IPR036322 GO:0005515
Arst8g00315 842 SMART Lish 17 49 IPR006594 GO:0005515
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 602 IPR001680 GO:0005515
Arst8g00315 842 MobiDBLite consensus disorder prediction 302 343 - -
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 635 IPR001680 GO:0005515
Arst8g00315 842 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Arst8g00315 842 ProSitePatterns Trp-Asp (WD) repeats signature. 580 594 IPR019775 -
Arst8g00315 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 635 - -
Arst8g00315 842 Pfam LisH 19 45 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00315 Arst-Chr8 4494339 4504060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00315 579 827 U-box Gene Family AT2G33340 29.070 5.01e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst8g00315 WD40 0.0065 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00315 - - adu:107460205 1606.27