Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00308 ATGTCGGGATCGGAGATGGGAAGAAGAGAAGGCTTCACCGTTGGGCTTCACAGCCATAACAGCATGCGTTTGGACTTTTCTGATGGCCCTGCTCTCTACAGCAACAGCAACAACAACCCTCTTGCGCCACCTTCTGCTTCTCCAACTTACCACCCTTCCACCGCAGTCACCGCTGCACCTATCAACATCAATGGCAGCGCGGTTGGCGGCATGGAATCGTTGGCGGCGCTGCCACAGGGCGGCCACATCGGGAGTAGCTCTGAGCCGAAGAAGAAGAGAGGGAGGCCAAGGAAATACGTACCGGATGGTGGCGGCGTAGGGTTAGGGTTGAATCCAGATTCTTCTGCTCCTGGTATGACCGTTAACCATAGCCAGAACCAGAATCCGAATCTGAATTCGAGCTTGAACCAGAATCAGTCCGGTGGCGGAGCTATGTCGCCGGCAATTGCTTCCGCCACACCTAATTCTAATTCCGGGAAGAAAAGGGGAAGGCCTCGTGGCTCTCTCAACAAGCATCCTCACTTAAAGGGTCTTGGATTGGCAAAACTTACTTTCACTCCGCATGTTCTTACTGTGAAATCTGGAGAGGATCTGGGAGTAAAGGTTACGTCCATCTCCATGGATGGTCCAAGAAATATTTGTATCTTAACAGCAAATGGAACCATATCTAATGTAACACTTAGCCAACCTTCGATACCTGGAGGAACTGTGACCTATGAGGGACGATTTGAGATCCTGGCACTCTGTGGTTCTTTTCTTCTTTCTGAAAATGGTCAGTTCCAAAGAACTGGTTCTTTAAGTCTGACCTTGTCTGGGCCTGATGGTCGGGTTATGGGTGGTGCAATCGCAGGTGTTTGTGTAGCTGCTTCCCCAATTCAGATAGTTTTCGCAAGCTTCCTTGTAGATGGTGGTTACAAGAAAATGAAGTCATCGAACCAGAACCAGAACCAGAACCAGAACCAGATGGGGACCTTACCTTCCTCCCCTAATGTTCTCCCGGCTGGTCAAAGCAGCTCGCCATCGCATGGCACTCTTAGTGAATCTTCTGGTGGAGCCGGCAGCCCACTTAACCTGAGTACAGATGTTTGCAATAACAATAACACCCCACAAGGAATTTCCGGAATGCCCTGGAAATGA 1137 0.5013 MSGSEMGRREGFTVGLHSHNSMRLDFSDGPALYSNSNNNPLAPPSASPTYHPSTAVTAAPININGSAVGGMESLAALPQGGHIGSSSEPKKKRGRPRKYVPDGGGVGLGLNPDSSAPGMTVNHSQNQNPNLNSSLNQNQSGGGAMSPAIASATPNSNSGKKRGRPRGSLNKHPHLKGLGLAKLTFTPHVLTVKSGEDLGVKVTSISMDGPRNICILTANGTISNVTLSQPSIPGGTVTYEGRFEILALCGSFLLSENGQFQRTGSLSLTLSGPDGRVMGGAIAGVCVAASPIQIVFASFLVDGGYKKMKSSNQNQNQNQNQMGTLPSSPNVLPAGQSSSPSHGTLSESSGGAGSPLNLSTDVCNNNNTPQGISGMPWK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00308 378 CDD DUF296 186 299 IPR005175 -
Arst8g00308 378 MobiDBLite consensus disorder prediction 30 53 - -
Arst8g00308 378 MobiDBLite consensus disorder prediction 1 53 - -
Arst8g00308 378 MobiDBLite consensus disorder prediction 308 378 - -
Arst8g00308 378 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 300 - -
Arst8g00308 378 MobiDBLite consensus disorder prediction 76 174 - -
Arst8g00308 378 Gene3D - 187 318 - -
Arst8g00308 378 ProSiteProfiles PPC domain profile profile. 181 321 IPR005175 -
Arst8g00308 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 359 IPR039605 GO:0003680
Arst8g00308 378 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Arst8g00308 378 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Arst8g00308 378 MobiDBLite consensus disorder prediction 115 163 - -
Arst8g00308 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 187 299 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00308 Arst-Chr8 4398211 4401773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00308 28 378 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 45.278 9.81e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00308 - - ahf:112705741 692.189