Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00287 ATGAATTTGTTTTTTATTCTTTGTCCGTTGTTGTTGTTCTTCCCCTTTTTGGGAGTATCTGCTGCTGCAAATGTCTCGTCCTCAAGACCTTCTGTCGCGAACATTGGGGCGATCTTCACCTTCAATTCCACAATTGGGAGAGTGGCTAAAATTGCCATGGAGCAAGCAGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACAAAGCTTGTCCTCCAAATGCAAGATTCCAATTGTAGTGGTTTCATGGGCATGGTTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCAAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCCGCCACAGATCCTACTCTTACCTCCCTGCAGTTCCCATTCTTTGTGAGGACAACACAGAGTGATTTGTATCAAATGACTGCAGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATTTAGATGATGATTATGGACGAAATGGTGTTTCTGTGTTGGATGATCAGCTGGCTGCTCGGCGCTGCAAAATATCCTACAAGGCTGCAATCAAATCTGGATCAGTTGACCGGGGAGAGATCACGAATTTGCTTGTGCAAGTGGCTCTGATGCAATCTCGGATCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCGCATTATCTTGGGATGACAACCAATGGCTTTGTCTGGATAGCCACGGATTGGCTGTCATCTGTCTTGGATTCTACTTCTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACACCCGATTCTGATAGAAAGAAATCATTTATCTCTACATGGAACAAGTTAACTGGTGGCTCTTTGGGGCTACATTCCTATGGTCTCTATGCTTATGATTCTGTCTTTCTGTTAGCGCACGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCGTGTACCAACTACACTAGTTTGCGCGATGATAAGCCTGGTGGTCTTAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTCTGCTGAAGAACATAGAGCAGAGTGATTTTCTTGGATTAACAGGTCATGTGAAATTTGCATCAGACAGATGCCTTGTTCGTCCTGCATATGATGTTATCAATGTGGTTGGAACTGGCATTCATCGGCTAGGTTACTGGTCGAACTATTCTGGTCTCTCAATTGTGCCTCCAGAGACATTGTATGCTAAGCCGGCTAATAAATCAAGTGCAAACCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCCCGTGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTGTTCGAGTTGGTTTCCGCGAATTTGTTTCGCCGGTGCAGGGAACTGATATGTTTAAAGGTTTCTCTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCATATGCTGTTCCATACCACTTTGTCCCATTTGGAAGTGGCCGCGAGAATCCAAGCTACACACAACTTGTCAATTTAATTGCCACAGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATCATCACGAATCGGACAAAGATTGTAGATTTCACACAGCCATATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAAATCAATTCTGGAGGATGGTCTTTCCTTCGGCCATTCACACCACTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTCGTTGGAATAGTTGTATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGCCCACCAAAACAACAATTCATAACAATTTTATGGTTTAGCCTTTCAACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGCAGATTGGTGGTTCTGATCTGGCTGTTTGTAGTGTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGCTATCTTCCCCTATCAGTGGAATAGATAGCTTAAAGAATAGTAATGAACACATAGGATTCCAAGTGGGTTCATTCGCGGAGCACTATTTGGTTGAGGACATCGGGATATCCGAAAATAGACTCGTTCGCCTAGGATCTCCAGAAGCATATGCTAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACATTGAAATCTTCTTATCAACACAATGCACATTCAAAATTGTAGGCCAGGAGTTCACCCGAAGTGGCTGGGGTTTTGCATTCCCTCGCGACTCCCCATTAGCCGTGGATTTGTCAACTGCTATTCTACAACTTTCGGAGACAGGGGATCTGCAGCGGATTCATGATAAGTGGATGACAAGAAGCAGCTGTAGTTTAGATAATGCCGAGATTGATTCGGATAGGCTTCAGTTGAAAAGCTTCTGGGGACTGTTCCTCCTTTGTGGCTTGGCTTGCTTCATAGCTCTTGTCATACATTTTGTGCAAATTATGGTGCGGATGTGGCATGCACCTCCTCCTGAAGCTGCATCTAATGGTAGCTCCATTTCTGGTCGTTTTCAAAGGTTTCTGTCACTGATTGATGAGAAGGAAGAGTCACCAAGGAGTGAGAGAAGAAAGAGGAATGGAGATGAAGGATCTGCTGCTGATCATCAACTTGATGGGAGGCACACAAAGAGGATACAGTTTGATTTAACACCCAACTCAAACAGATAA 2778 0.4377 MNLFFILCPLLLFFPFLGVSAAANVSSSRPSVANIGAIFTFNSTIGRVAKIAMEQAVKDVNANTSILHGTKLVLQMQDSNCSGFMGMVQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVIAIYLDDDYGRNGVSVLDDQLAARRCKISYKAAIKSGSVDRGEITNLLVQVALMQSRIIVLHTNPDSGFMVFNVAHYLGMTTNGFVWIATDWLSSVLDSTSLPSETMDILQGVLVLRQHTPDSDRKKSFISTWNKLTGGSLGLHSYGLYAYDSVFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIEQSDFLGLTGHVKFASDRCLVRPAYDVINVVGTGIHRLGYWSNYSGLSIVPPETLYAKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPVRVGFREFVSPVQGTDMFKGFSIDVFTAAVNLLPYAVPYHFVPFGSGRENPSYTQLVNLIATGYFDGAVGDIAIITNRTKIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWTVTACFFFFVGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKNSNEHIGFQVGSFAEHYLVEDIGISENRLVRLGSPEAYAKALQLGSKNGGVGAIVDERPYIEIFLSTQCTFKIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLLCGLACFIALVIHFVQIMVRMWHAPPPEAASNGSSISGRFQRFLSLIDEKEESPRSERRKRNGDEGSAADHQLDGRHTKRIQFDLTPNSNR 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00287 925 CDD GluR_Plant 465 806 - -
Arst8g00287 925 FunFam Glutamate receptor 462 577 - -
Arst8g00287 925 FunFam Glutamate receptor 148 304 - -
Arst8g00287 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 882 IPR015683 -
Arst8g00287 925 SUPERFAMILY Periplasmic binding protein-like II 443 809 - -
Arst8g00287 925 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Arst8g00287 925 SUPERFAMILY Periplasmic binding protein-like I 28 459 IPR028082 -
Arst8g00287 925 Gene3D - 773 806 - -
Arst8g00287 925 Pfam Bacterial extracellular solute-binding proteins, family 3 474 808 IPR001638 -
Arst8g00287 925 Pfam Receptor family ligand binding region 50 405 IPR001828 -
Arst8g00287 925 FunFam Glutamate receptor 578 708 - -
Arst8g00287 925 Gene3D - 576 710 - -
Arst8g00287 925 PIRSF IGluLR_plant 1 924 IPR017103 -
Arst8g00287 925 FunFam Glutamate receptor 704 811 - -
Arst8g00287 925 PIRSF IGluLR_plant 1 924 IPR017103 -
Arst8g00287 925 Gene3D - 148 420 - -
Arst8g00287 925 CDD PBP1_GABAb_receptor_plant 34 424 IPR044440 -
Arst8g00287 925 Gene3D - 462 575 - -
Arst8g00287 925 MobiDBLite consensus disorder prediction 882 925 - -
Arst8g00287 925 Gene3D - 739 772 - -
Arst8g00287 925 MobiDBLite consensus disorder prediction 882 915 - -
Arst8g00287 925 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Arst8g00287 925 Gene3D - 51 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00287 Arst-Chr8 4177343 4181609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00287 11 904 Ion Channels AT1G42540 63.797 0.0 1222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00287 K05387 - gmx:102661260 1474.14