Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00278 ATGATGGCTTCAAGCTGGGATGGAAGCAATGACCCTGGCAGCCAGTCAGATGATAGCTTTCATTTCGATAGGTTGCACATTGAGCCCATTTATGATGCTTTCGTGTGTCCTCTGACAAAGCAAGTTATGCGGGACCCTGTAACGTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGAAAGTGGACGGCAACTTGTTTGTCCGTTGACTCTGCAGGAGTTAAAGAGTGCAGAACTGAATCCAAGTATGGCTCTGCGAAACACCATTGAAGAGTGGACGGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGCTCGTTGAATATGGGAAGTCCAGAAAGTGATACGCTTCAGACTTTAAAGTATATCCAGCACATATGCCGAAGAAGCAGGTCAAATAAGCATAATGTCCGCGGTGCAGGGCTCATACCCATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGATACGATGTAGAGCTTTGGAAACTCTTAGAGTTGTGGTAGAGGAAGACGATGAAAATAAGGAATTGTTGGCGGAAGGTGACACTGTGCGTACAGTTGTAAAATTCCTGTCTCATGAGCTTTCAAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCTGAAACCCTATGTGAGAAGATTGGTTCAATTAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCAGAAGATCTTTCTACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAACGTACGGCAGATGGCTGAAAATGGTAGATTGAAGCCTCTTCTGACCCAACTTCTTGAAGGTCCACCGGAAACAAAACTTTCAATGGCTGGATTCCTTGGTGAGCTGGTTTTAAACAATGACGTCAAAGTCCATGTTGCTAGAACTGCAGGTTCATCTTTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCGTGCGAGCCAAGTGCAAAGGTTCTTATCGAAGCGGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCAAATCAGCTTCCAACACGATTAAAAGAGGTTGCTGCTACAATTCTTGCCAATGTGGTGAACTCAGGGGAAGACTTTGACTCAATTCCTTTCGGACCTGGTCACCAAACTCTGGTCTCAGAGGACATAGTTCATAATCTACTTCATCTCATAAGCAATACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTCGGACTCACTAATTCTCCAACCACAGTTCTGAGTGTGGTTTCTGCTATCAAAAGTTCTGGCGCCACTATCAGTTTAGTTCAATTCATTGAGGCTCCACAGAAAGATCTGCGTGTAGCTTCCATAAGACTTCTTCGAAATCTCTCACCCCACATGGGTCAGGAACTAGCCGATGCTCTACGTGGCTCAGTCGGACAGCTTAGTGGTCTAGTTAAAGTCATATCAGAGAGTACAGGAATCACTGAAGAGCAGGCAGCAGCTGTTGGCCTTTTAGCGGATCTTCCTGAGAGGGATTTGGGACTCACAAGGCAGCTGCTAGATGAAGGTGCATTTCAGCTGGTCATATCTAGGGTGATTGCCATCAGGAAGGGTGAGATCAGGAGCAGTCGCTTCATGACACCATTTCTTGAAGGGCTTGTGAAGATCCTTGCAAGGGTTACATATGTCATCGATCAGGAGCCAGAAGCCCTTGCACTCTGTCGTGACCACAATCTTGCTGCATTGTTTATTGAAATGCTTCAAACTAACGGACTTGATAATGTACAGATGGTTTCCGCCACAGCTTTAGAGAACCTGTCCCAAGAGTCAAAAAATTTAACAAAGTTGCCTGATTTGCCACCGCCAGGTGTTTGTGCTTCAATCTTTACATGCTGTTACACACAACCGGTCATTACTGGACTGTGTAGAATTCATAGAGGATTGTGCTCTTTAAAAGAAACATTTTGCCTTTTTGAAGGGCAAGCAGTCCTTAAGTTGGTAGCTCTACTGGACCACACGAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTAGCTACTCTTATAGATGATGGAGTGGATATTGAACAAGGAGTACAGGTGTTGTTGGATGCGGAGGGAGTGAGGCCTATACTCGATGTGTTACTCGAGAAACGGACAGAGAACTTGCGGAGGAGGGCAGTCTGGGCAGTGGAGAGATTGTTGCGAACAGAGGATATAGCCTATGAAGTTTCAGGCGATCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGCGACTACCGAACAAGGCAGATTGCGGAGCGTGCCCTCAAGCATGTTGATAAGATACCAAACTTCTCCGGAATCTTCCCAAACATGGGAGGAGCGTAA 2448 0.4502 MMASSWDGSNDPGSQSDDSFHFDRLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRQLVCPLTLQELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPESDTLQTLKYIQHICRRSRSNKHNVRGAGLIPMIVDMLKSSSRKIRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAENGRLKPLLTQLLEGPPETKLSMAGFLGELVLNNDVKVHVARTAGSSLINIMKSGNMQSREAALKALNQISCEPSAKVLIEAGILSPLVNDLFAVGPNQLPTRLKEVAATILANVVNSGEDFDSIPFGPGHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASIRLLRNLSPHMGQELADALRGSVGQLSGLVKVISESTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFQLVISRVIAIRKGEIRSSRFMTPFLEGLVKILARVTYVIDQEPEALALCRDHNLAALFIEMLQTNGLDNVQMVSATALENLSQESKNLTKLPDLPPPGVCASIFTCCYTQPVITGLCRIHRGLCSLKETFCLFEGQAVLKLVALLDHTNVNVVEAALAALATLIDDGVDIEQGVQVLLDAEGVRPILDVLLEKRTENLRRRAVWAVERLLRTEDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMGGA 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00278 815 Gene3D - 321 487 IPR011989 -
Arst8g00278 815 SUPERFAMILY ARM repeat 457 799 IPR016024 -
Arst8g00278 815 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Arst8g00278 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 116 IPR013083 -
Arst8g00278 815 SMART arm_5 140 180 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 717 759 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 446 487 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 182 222 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 347 392 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 590 631 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 672 713 IPR000225 GO:0005515
Arst8g00278 815 SMART arm_5 267 307 IPR000225 GO:0005515
Arst8g00278 815 Gene3D - 573 803 IPR011989 -
Arst8g00278 815 Coils Coil 257 277 - -
Arst8g00278 815 SUPERFAMILY RING/U-box 25 111 - -
Arst8g00278 815 CDD RING-Ubox_PUB 31 88 IPR045210 -
Arst8g00278 815 Gene3D - 117 320 IPR011989 -
Arst8g00278 815 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 809 - -
Arst8g00278 815 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 809 - -
Arst8g00278 815 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Arst8g00278 815 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Arst8g00278 815 SUPERFAMILY ARM repeat 123 444 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00278 Arst-Chr8 4137398 4141204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00278 3 813 U-box Gene Family AT1G76390 64.373 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00278 - - adu:107460240 1564.67