Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00230 ATGTCCTCTTCCACCGTTGGCAATGAGGAGGAGAAGCTTTACCCTTCCCCACTAGCCTCTCACGACGACATCGTCAAGGACCCTTCTGTCTTTTGGGATACTCTCAGACGCTTTCACCTCCTTCTCAGTACCAAATTCATCATACTACAACAAGCTAGCTGGAATATGATTTTGATATTCGGGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTCCTGTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGAACTGTCTTCAGGTTCTCAGCGACGACCACAAGCGCCTCTTTTGTGCTCAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTTAAGGGTCCTCTATACTCTCCATCATCAGATTCATTTTCTGGCAGCAAGCACTCCTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAGTGACCCATACTAAAGGTTCCAAACCTCAAGAGTCTATAGACCCTTCATCAAATCTTTCAGGGAGGGGAACGATAGAGGGAAAATTTGAATGCGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTGCTGTACCATCCAGAGGAATTGGTTCCTCCCCCAACTGTTCCACAAAATGGCAATGCCATCGTACCCTACGGCTGCAAACCTCACCATTCCGGCCGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAACTACCCGAAGCCAAATCGGAGTGGTTATAACTTCTTCTTTGCTGAGAGGCATTACAAGCTCAAGTCACTTTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAAGGAGTACAAGGAAAAGATGAAGATTATGCAAAATTTAGAAGTTGCGGCGCCCAGAAATCTCACTGGTTCTGTCCTTAATGGTAGCCAAAGAATGGCTTAG 1065 0.4629 MSSSTVGNEEEKLYPSPLASHDDIVKDPSVFWDTLRRFHLLLSTKFIILQQASWNMILIFGIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFRFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYSPSSDSFSGSKHSWRSELAIVEYSPKPVTHTKGSKPQESIDPSSNLSGRGTIEGKFECGYLVSVKVGSEVLRGVLYHPEELVPPPTVPQNGNAIVPYGCKPHHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAERHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELKEYKEKMKIMQNLEVAAPRNLTGSVLNGSQRMA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00230 354 Coils Coil 314 334 - -
Arst8g00230 354 SUPERFAMILY HMG-box 255 328 IPR036910 -
Arst8g00230 354 Pfam HMG (high mobility group) box 258 325 IPR009071 -
Arst8g00230 354 Gene3D - 18 136 IPR036431 GO:0003677
Arst8g00230 354 MobiDBLite consensus disorder prediction 234 258 - -
Arst8g00230 354 SMART hmgende2 257 326 IPR009071 -
Arst8g00230 354 CDD ARID_HMGB9-like 27 126 IPR045303 GO:0003677
Arst8g00230 354 SMART ARID_2 22 126 - -
Arst8g00230 354 MobiDBLite consensus disorder prediction 168 186 - -
Arst8g00230 354 ProSiteProfiles ARID domain profile. 25 130 IPR001606 GO:0003677
Arst8g00230 354 Pfam ARID/BRIGHT DNA binding domain 31 126 IPR001606 GO:0003677
Arst8g00230 354 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 258 325 IPR009071 -
Arst8g00230 354 MobiDBLite consensus disorder prediction 163 186 - -
Arst8g00230 354 CDD HMG-box_AtHMGB9-like 258 324 - -
Arst8g00230 354 Gene3D High mobility group box domain 242 341 IPR036910 -
Arst8g00230 354 SUPERFAMILY ARID-like 22 133 IPR036431 GO:0003677
Arst8g00230 354 MobiDBLite consensus disorder prediction 239 253 - -
Arst8g00230 354 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 336 - -
Arst8g00230 354 SMART bright_3 26 131 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00230 Arst-Chr8 3173970 3177079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00230 12 330 ARID Transcription Factor Family AT1G76110 61.920 1.43e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst8g00230 ARID 8.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00230 - - adu:107460270 699.508