Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00218 ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCCATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATCCCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGTTTGTAGAGCCAAGCTTGACCCTCAGCTTTTCACTCCTCAGAGCCATTGCTGA 384 0.5573 MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTPQSHC 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00218 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Arst8g00218 127 SUPERFAMILY RING/U-box 70 120 - -
Arst8g00218 127 Pfam Ring finger domain 70 113 IPR001841 -
Arst8g00218 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 119 IPR013083 -
Arst8g00218 127 SMART ring_2 71 112 IPR001841 -
Arst8g00218 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00218 Arst-Chr8 2817917 2819133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00218 1 120 C3H Transcription Factor Family AT5G42200 55.906 5.60e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00218 K19037 - gmx:100776003 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00218 8 2817917 2819133 Arst8g00218 8 2817917 2819133 ECH
Arst6g01723 6 17840250 17841088 Arst8g00218 8 2817917 2819133 PCT