Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00215 ATGGCTAAATCCATGCTTGTTTTTGCTACCTTCCTCTCATTTTGTTTTACTACTAATACTTGCGCCTTCTCACCTTCTGCATGGACCAGCGGCCATGCCACTTTTTATGGAGGCAGCGATGCCTCAGGCACAATGGGAGGTGCTTGTGGATATGGGAACCTGTATTCAGCAGGGTATGGTACTAGAACTGCAGCATTAAGTACTGCTCTGTTCAATGATGGAGCTTCGTGTGGTGAGTGCTACAAAATTATATGTGATTTTCGAGCAGACCCTAGATGGTGTGTCAAAGGAACATCCGTCACCATAACAGCTACCAACTTCTGCCCTCCTAACTTTGCCCTTCCCAACAACAATGGAGGCTGGTGTAACCCACCGCTCAAGCATTTTGACATGGCTCAACCTGCATGGGAAAAAATTGGCATTTATAGAGGAGGGATAGTTCCCGTTCTGTTCCAAAGGGTTCCATGCAAGAAGAAGCATGGAGGGGTAAGGTTCACTGTGAATGGAAGAGACTACTTTGAGCTTGTGTTGATAAGCAATGTGGCAGGAGCTGGATCCATCAAAGCTGCGTCGATTAAAGGATCAAAAACTGGATGGATGACTATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAACGCGTATTTGAATGGCCAATCTTTGTCCTTCAGGGTCACAACCACCGACGGCGAAACCAGACTCTTCCAAGATGTGGTTCCACCAAACTGGTCATTTGGACAGAGTTTCTCTAGCAGTGTCCAGTTCTGA 768 0.4648 MAKSMLVFATFLSFCFTTNTCAFSPSAWTSGHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGECYKIICDFRADPRWCVKGTSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKKHGGVRFTVNGRDYFELVLISNVAGAGSIKAASIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGETRLFQDVVPPNWSFGQSFSSSVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00215 255 SUPERFAMILY Barwin-like endoglucanases 27 180 IPR036908 -
Arst8g00215 255 Pfam Lytic transglycolase 63 150 IPR009009 -
Arst8g00215 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Arst8g00215 255 Gene3D - 14 157 IPR036908 -
Arst8g00215 255 SMART dpbb_1 63 151 IPR007112 -
Arst8g00215 255 PANTHER EXPANSIN-A15 5 251 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Arst8g00215 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Arst8g00215 255 FunFam Expansin 17 157 - -
Arst8g00215 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Arst8g00215 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Arst8g00215 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Arst8g00215 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Arst8g00215 255 FunFam Expansin 162 255 - -
Arst8g00215 255 Gene3D - 162 255 IPR036749 -
Arst8g00215 255 CDD DPBB_EXPA_N 28 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00215 Arst-Chr8 2772813 2774011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00215 63 255 Expansin Gene Family AT1G20190 82.383 6.86e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00215 - - lang:109341531 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00215 8 2772813 2774011 Arst8g00215 8 2772813 2774011 ECH
Arst6g01721 6 17752274 17753560 Arst8g00215 8 2772813 2774011 PCT