Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00177 ATGTCAACTTTGGGGAAGGATAAAAAATCCCAATTAAAGCATCGATTCCATCCACATTCTCATTCTCTTTCTCAATCCTTTTCCCATTCCATACTCCCTAACCCACCCTTGACTCAAACATGTGCAATCAATAGTTTCAACTTCAATAATCATAATCACAATCACACAAGTAATCATCGTCAACTACCTCCTACTTTCTACAATCAAACTCAGCCTCCCATTAGGGCAGAGAATCAAACCACCAAGTCAAAACTTTCCAGATATACAAAACATGCCACTCACGAACCTAATGCTACTGAAGCTCCTCATTTGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCTACTTGATTGAAGCGGCTGACTATGGTACCTTGGATTTAAATAAAACTGCTGAGACCTTGGAGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTCGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGACCCCAAGAACTGAATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAGTCTGTATGCTGAAGAATCTGCACTTGATGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACCTGGAGGAAAATGAAAATTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCGAAAGTTAGTGTTGTCGAGGTTCCCGATCCTGAGGAGTTAGGTTTCTGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATACCTATTGAGCAAGAAAGGCCTTAAGTGTAAGGGTGATACTATCGAGCAGGTGAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGAAAGGGAGGCTGATCTAAAAAATCCTTGTGAGGTTTTAACATCCCCAGGCTCAGAGGCATTTGGAATCCACGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 1140 0.3851 MSTLGKDKKSQLKHRFHPHSHSLSQSFSHSILPNPPLTQTCAINSFNFNNHNHNHTSNHRQLPPTFYNQTQPPIRAENQTTKSKLSRYTKHATHEPNATEAPHLAAVNNCRYDSSLGLLTKKFVYLIEAADYGTLDLNKTAETLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGPQELNYQLKRLKTEVESLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKVSVVEVPDPEELGFWHYKMTVRSATGPIYIYLLSKKGLKCKGDTIEQVKLIDPSWNGNHCKMRDMILSEREADLKNPCEVLTSPGSEAFGIHEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00177 379 PANTHER TRANSCRIPTION FACTOR E2F 59 374 IPR015633 GO:0000978|GO:0006357
Arst8g00177 379 Gene3D - 183 291 - -
Arst8g00177 379 Coils Coil 206 226 - -
Arst8g00177 379 MobiDBLite consensus disorder prediction 52 80 - -
Arst8g00177 379 SUPERFAMILY "Winged helix" DNA-binding domain 111 174 IPR036390 -
Arst8g00177 379 SUPERFAMILY E2F-DP heterodimerization region 188 290 IPR037241 -
Arst8g00177 379 Pfam E2F/DP family winged-helix DNA-binding domain 113 176 IPR003316 GO:0005667|GO:0006355
Arst8g00177 379 SMART E2F_TDP_2 111 176 IPR003316 GO:0005667|GO:0006355
Arst8g00177 379 Gene3D - 106 178 IPR036388 -
Arst8g00177 379 MobiDBLite consensus disorder prediction 1 30 - -
Arst8g00177 379 CDD E2F_DD 188 290 IPR032198 GO:0046983
Arst8g00177 379 FunFam E2F transcription factor 1 105 178 - -
Arst8g00177 379 Pfam E2F transcription factor CC-MB domain 192 288 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00177 Arst-Chr8 2375403 2378615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00177 105 378 E2F-DP Transcription Factor Family AT1G47870 54.545 4.97e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst8g00177 E2F_CC-MB 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00177 K06620 - gmx:100797301 390.963