Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00176 ATGTCAACTTTGGGGAAGGATAAAAAATCCCAATTAAAGCATCGATTCCATCCACATTCTCATTCTCTTTCTCAATCCTTTTCCCATTCCATACTCCCTAACCCACCCCAGTTGACTCAAACATGTGCAATCAATAGTTTCAACTTCAATAATCATAATCACAATCACACAAGTAATCATCGTCAACTACCTCCTACTTTCTACAATCAAACTCAGCCTCCCATTAGGGCAGAGAATCAAACCACCAAGTCAAAACTTTCCAGATATACAAAACATGCCACTCACGAACCTAATGCTACTGAAGCTCCTCATTTGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCTACTTGATTGAAGCGGCTGACTATGGTACCTTGGATTTAAATAAAACTGCTGAGACCTTGGAGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTCGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGACCCCAAGAACTGAATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAGTCTGTATGCTGAAGAATCTGCACTTGATGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACCTGGAGGAAAATGAAAATTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCGAAAGTTAGTGTTGTCGAGGTTCCCGATCCTGAGGAGTTAGGTTTCTGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATACCTATTGAGCAAGAAAGGCCTTAAGTGTAAGGGTGATACTATCGAGCAGGTGAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGAAAGGGAGGCTGATCTAAAAAATCCTTGTGAGGTTTTAACATCCCCAGGCTCAGAGGCATTTGGAATCCACGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 1143 0.3858 MSTLGKDKKSQLKHRFHPHSHSLSQSFSHSILPNPPQLTQTCAINSFNFNNHNHNHTSNHRQLPPTFYNQTQPPIRAENQTTKSKLSRYTKHATHEPNATEAPHLAAVNNCRYDSSLGLLTKKFVYLIEAADYGTLDLNKTAETLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGPQELNYQLKRLKTEVESLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKVSVVEVPDPEELGFWHYKMTVRSATGPIYIYLLSKKGLKCKGDTIEQVKLIDPSWNGNHCKMRDMILSEREADLKNPCEVLTSPGSEAFGIHEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00176 380 Gene3D - 184 292 - -
Arst8g00176 380 PANTHER TRANSCRIPTION FACTOR E2F 60 375 IPR015633 GO:0000978|GO:0006357
Arst8g00176 380 MobiDBLite consensus disorder prediction 1 34 - -
Arst8g00176 380 SUPERFAMILY E2F-DP heterodimerization region 189 291 IPR037241 -
Arst8g00176 380 SUPERFAMILY "Winged helix" DNA-binding domain 112 175 IPR036390 -
Arst8g00176 380 FunFam E2F transcription factor 1 106 179 - -
Arst8g00176 380 Pfam E2F/DP family winged-helix DNA-binding domain 114 177 IPR003316 GO:0005667|GO:0006355
Arst8g00176 380 Pfam E2F transcription factor CC-MB domain 193 289 IPR032198 GO:0046983
Arst8g00176 380 Coils Coil 207 227 - -
Arst8g00176 380 Gene3D - 107 179 IPR036388 -
Arst8g00176 380 SMART E2F_TDP_2 112 177 IPR003316 GO:0005667|GO:0006355
Arst8g00176 380 CDD E2F_DD 189 291 IPR032198 GO:0046983
Arst8g00176 380 MobiDBLite consensus disorder prediction 53 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00176 Arst-Chr8 2375403 2378615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00176 106 379 E2F-DP Transcription Factor Family AT1G47870 54.545 5.19e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst8g00176 E2F_CC-MB 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00176 K06620 - gmx:100797301 390.963