Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00145 ATGGCTCGAGGGAAGATCCAGATCAAGAGGATAGAGAACACTACCAACAGGCAGGTCACATACTCCAAACGACGCAACGGACTTTTCAAGAAGGCCAATGAGCTCACCGTTCTCTGCGATGCTAAGGTTTCTATAATCATGTTCTCTAGCACTGGCAAACTCCATGAGTACATTAGCCCCTCCATCTCAACTAAGCAGTTCTTCGATCAGTATCAGATGACCGTAGGAATTGATCTCTGGAACTCCCACTATGAGTTGTTTTTGTTCTCTTTTTTTCAGCATATGCAAGAAAACTTGAGGAAGCTGAAAGATGTAAACAGGAATCTTCGTCAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGGGCATAGAAGAGCTTAAACTCCTTGAGGAAGAAATGGACAAGGCTTCTAAGGTTATTCGCGAGCGTAAGTACAAGATGATCACAAATCAGATTGACCAGCACAGGAAGAAGTTTAACAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGATTTAGATGCAAGAGCAGAAGATCCACGTTATGGATTGGTGGATAATGGAGAGTATGAATCTGTCATAGGATTCTCGAATTTAGGTCCTCGCATGTTTGCATTGAGCCTACAACCTAGCCATCCTAATGCACATAGCGGAGGAACAGCAGCCTCTGATCTTACCACTTACCCTTTACTTTTCTAG 708 0.4393 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSISTKQFFDQYQMTVGIDLWNSHYELFLFSFFQHMQENLRKLKDVNRNLRQEIRQRMGDCLNDLGIEELKLLEEEMDKASKVIRERKYKMITNQIDQHRKKFNNEKEVHNRLLRDLDARAEDPRYGLVDNGEYESVIGFSNLGPRMFALSLQPSHPNAHSGGTAASDLTTYPLLF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00145 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 Coils Coil 159 179 - -
Arst8g00145 235 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Arst8g00145 235 Coils Coil 92 115 - -
Arst8g00145 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 Pfam K-box region 93 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst8g00145 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Arst8g00145 235 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Arst8g00145 235 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst8g00145 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Arst8g00145 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst8g00145 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00145 Arst-Chr8 1688148 1692347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00145 1 234 MADS-box Gene Family AT3G54340 54.812 9.93e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst8g00145 K-box 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00145 K09264 - gmx:547720 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00145 8 1688148 1692347 Arst8g00145 8 1688148 1692347 ECH