Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g00141 | ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACCTAGAAGGAACCACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCTGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCACTTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCGTTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCACTTTACCCGGCTCCCCTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA | 1032 | 0.5203 | MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQPRRNHNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQHLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAVVAEGSSAGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g00141 | 343 | MobiDBLite | consensus disorder prediction | 72 | 101 | - | - | |
Arst8g00141 | 343 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 329 | IPR007818 | GO:0003700|GO:0006355 | |
Arst8g00141 | 343 | MobiDBLite | consensus disorder prediction | 14 | 34 | - | - | |
Arst8g00141 | 343 | Pfam | Domain of unknown function (DUF702) | 134 | 280 | - | - | |
Arst8g00141 | 343 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Arst8g00141 | 343 | NCBIfam | LRP1 C-terminal domain | 231 | 279 | IPR006511 | - | |
Arst8g00141 | 343 | NCBIfam | putative zinc finger domain, LRP1 type | 136 | 178 | IPR006510 | - | |
Arst8g00141 | 343 | MobiDBLite | consensus disorder prediction | 178 | 217 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g00141 | Arst-Chr8 | 1565768 | 1568288 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g00141 | 1 | 343 | C2H2 Transcription Factor Family | AT1G75520 | 45.263 | 2.12e-85 | 260 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Arst8g00141 | DUF702 | 3.2e-64 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g00141 | - | - | gmx:100794846 | 360.533 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst8g00141 | 8 | 1565768 | 1568288 | Arst5g01085 | 5 | 10786353 | 10788546 | ECH | |
Arst8g00141 | 8 | 1565768 | 1568288 | Arst3g00694 | 3 | 4891656 | 4893121 | ECH | |
Arst8g00141 | 8 | 1565768 | 1568288 | Arst8g00141 | 8 | 1565768 | 1568288 | ECH | |
Arst6g01637 | 6 | 16826877 | 16828617 | Arst8g00141 | 8 | 1565768 | 1568288 | PCT |