Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00141 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACCTAGAAGGAACCACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCTGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCACTTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCGTTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCACTTTACCCGGCTCCCCTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1032 0.5203 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQPRRNHNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQHLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAVVAEGSSAGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00141 343 MobiDBLite consensus disorder prediction 72 101 - -
Arst8g00141 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 329 IPR007818 GO:0003700|GO:0006355
Arst8g00141 343 MobiDBLite consensus disorder prediction 14 34 - -
Arst8g00141 343 Pfam Domain of unknown function (DUF702) 134 280 - -
Arst8g00141 343 MobiDBLite consensus disorder prediction 1 34 - -
Arst8g00141 343 NCBIfam LRP1 C-terminal domain 231 279 IPR006511 -
Arst8g00141 343 NCBIfam putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Arst8g00141 343 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00141 Arst-Chr8 1565768 1568288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00141 1 343 C2H2 Transcription Factor Family AT1G75520 45.263 2.12e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Arst8g00141 DUF702 3.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00141 - - gmx:100794846 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00141 8 1565768 1568288 Arst5g01085 5 10786353 10788546 ECH
Arst8g00141 8 1565768 1568288 Arst3g00694 3 4891656 4893121 ECH
Arst8g00141 8 1565768 1568288 Arst8g00141 8 1565768 1568288 ECH
Arst6g01637 6 16826877 16828617 Arst8g00141 8 1565768 1568288 PCT