Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00025 ATGAACAACAACAACAACTACTACAACAGAGCGAGGTACCCACCACCTGGGATCGGTGGCGGTGGTCTTGGACGAGGAGGAGGAGGAGGAGGCCCTGGTTTCAATCAAAACTCACCGTTTCAGCCAAGGCCTAATTACCAGCAACACCAGCAACAGCATCAACAACTACAACAGCAGCATCAGCAATATGTTCAGAGGCAGATGGTGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAATGGCTGAGAAGGGCGCAGATGGGTGCTGCTGACTCCAACGTCGTGGATGAGGTTGAGAAGACCGTGCAGTCTGAAGCCATTGACCCGAGTTCTCAAGATTGGAAGGCAAGGCTAAAGGTTCCACCACCTGATACGCGTTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAATAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATATTGGTTCCAACAAGGGAGTTAGCTTTGCAAACATCTCAAGTATGCAAAGAACTTGGAAAGCACTTGAAAATTCAAGTGATGGTTACAACTGGTGGTACTAGCCTGAAAGATGATATCATGCGCTTATATCAACCAGTTCATTTACTAGTTGGGACTCCTGGAAGGATATTGGATCTTGCTAAGAAGGGTGTTTGCGTTCTGAAAGATTGCGCAATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCCCCAGAATTCCAGCCTTCTATACAGCAGCTGATTCATTTTCTTCCTTCACACCGACAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAGCCATATGTCATTAACCTTATGGATGAGCTAACTTTGAAGGGTATCACACAGTATTATGCATTTGTCGAAGAGAGACAGAAGGTTCACTGCCTGAATACACTATTTTCTAAGTTGCAAATAAACCAGTCAATCATCTTTTGCAATTCGGTGAATCGTGTTGAACTCCTTGCAAAAAAAATCACCGAGCTTGGATATTCGTGTTTCTATATTCACGCAAAGATGTTGCAAGATCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGCGCCTGCCGTAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTCCACAGGGTCGGTCGCTCAGGGAGGTTTGGGCATCTTGGTTTAGCAGTTAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCACCACACATTGACCAGGCAATTTATTGCCGGTGA 1548 0.4218 MNNNNNYYNRARYPPPGIGGGGLGRGGGGGGPGFNQNSPFQPRPNYQQHQQQHQQLQQQHQQYVQRQMVQQQQQQQQQQQQQQWLRRAQMGAADSNVVDEVEKTVQSEAIDPSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKIAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSPEFQPSIQQLIHFLPSHRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00025 515 CDD DEADc_DDX6 143 343 - -
Arst8g00025 515 SMART ultradead3 160 356 IPR014001 -
Arst8g00025 515 SMART helicmild6 392 473 IPR001650 -
Arst8g00025 515 MobiDBLite consensus disorder prediction 95 132 - -
Arst8g00025 515 MobiDBLite consensus disorder prediction 1 59 - -
Arst8g00025 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 512 IPR001650 -
Arst8g00025 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Arst8g00025 515 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Arst8g00025 515 Gene3D - 346 515 IPR027417 -
Arst8g00025 515 SUPERFAMILY beta-sandwich domain of Sec23/24 34 96 - -
Arst8g00025 515 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Arst8g00025 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 514 - -
Arst8g00025 515 CDD SF2_C_DEAD 353 482 - -
Arst8g00025 515 Gene3D - 111 345 IPR027417 -
Arst8g00025 515 Pfam Helicase conserved C-terminal domain 367 473 IPR001650 -
Arst8g00025 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
Arst8g00025 515 FunFam ATP-dependent RNA helicase DDX6 346 515 - -
Arst8g00025 515 FunFam ATP-dependent RNA helicase DDX6 122 345 - -
Arst8g00025 515 MobiDBLite consensus disorder prediction 34 59 - -
Arst8g00025 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 495 IPR027417 -
Arst8g00025 515 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00025 Arst-Chr8 139464 145048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00025 141 512 Eukaryotic Initiation Factors Gene Family AT3G19760 37.701 2.21e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00025 K12614 - fve:101307921 843.573