LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g00010	ATGAGGCCTACAATGATGCTTAGGGCTCTCAACAAGCAGTTCATTGGATTGTTCTCGGACAAAAGCTTGACTAGTGCATCCAATGCTGCTGTGAAGAAGCCACTGCCGCTCGTGGCCTCTCGCAAACCAGCGTTCATTGATGCATTCCTTCACAAGATGAAAAACAACAAGACCCTTCTCATGAACAAGACCATTTGGTCTCGGAGATCCACCATCTTGCCCGAATTTGTGGATACCACTGTCAGAATCTACAATGGCAAAACCACCGTTCGCTGCAAGATCAATGAGGGAAAAGTTGGTCACAAATTCGGGGAGTTTGCACTCACCAGGAAGCGCAAGACCAGAGAACAACAATCCAATGCTAAGAATGTCAAGCCCAAGAAAAAGAAGTGA	393	0.4656	MRPTMMLRALNKQFIGLFSDKSLTSASNAAVKKPLPLVASRKPAFIDAFLHKMKNNKTLLMNKTIWSRRSTILPEFVDTTVRIYNGKTTVRCKINEGKVGHKFGEFALTRKRKTREQQSNAKNVKPKKKK	130

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g00010	130	ProSitePatterns	Ribosomal protein S19 signature.	85	109	IPR020934	GO:0003723
	Arst8g00010	130	Hamap	30S ribosomal protein S19 [rpsS].	6	123	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00010	130	FunFam	Ribosomal protein S19, mitochondrial	35	125	-	-
	Arst8g00010	130	Pfam	Ribosomal protein S19	50	113	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00010	130	MobiDBLite	consensus disorder prediction	108	130	-	-
	Arst8g00010	130	Gene3D	30s Ribosomal Protein S19; Chain A	6	124	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00010	130	MobiDBLite	consensus disorder prediction	108	123	-	-
	Arst8g00010	130	PANTHER	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	27	122	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00010	130	PRINTS	Ribosomal protein S19 family signature	85	97	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Arst8g00010	130	PRINTS	Ribosomal protein S19 family signature	97	112	IPR002222	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g00010	Arst-Chr8	91331	93036	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g00010	6	111	Cytoplasmic Ribosomal Protein Gene Family	AT5G09490	25.472	8.93e-06	41.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g00010	K02965		-	gmx:100305608	169.859

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