Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g03315 ATGACAGCTAACCTCATCGGCTCAAAATACCATATCTGGGATCAGGGATATCGACCTAATTCCCGCAATACGCAACCGAAATTACCTCTTGCTGTAGTGACGTATATACCAACAGTAGCAACATGTACCGGAAGTCACAGAAGCATGAGAGCATATATCCCCAAGCATCAATCTCTGTCACTGAAGAATGTCACACAGTTACAACATATTAAAGGGTTGCCATTGGATTGGGAGGAGAAATGGGACACAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGGCAGAACTTAGAATCCAAAGATCGGTGAAAAATTTCCAACTCACTTTAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGCAGGGTGGGAAAATCAAAATTCGTCATGGACTACAGATATCCACTGACAGGCTACCAAGCTTTTTGCATCTGTCTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 525 0.4286 MTANLIGSKYHIWDQGYRPNSRNTQPKLPLAVVTYIPTVATCTGSHRSMRAYIPKHQSLSLKNVTQLQHIKGLPLDWEEKWDTVHQLFSKVPLYNKISKQFELDFRDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDTKLCCTV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g03315 174 Pfam Tub family 1 168 IPR000007 -
Arst7g03315 174 SUPERFAMILY Tubby C-terminal domain-like 1 173 IPR025659 -
Arst7g03315 174 PRINTS Tubby superfamily signature 151 173 IPR000007 -
Arst7g03315 174 PRINTS Tubby superfamily signature 87 104 IPR000007 -
Arst7g03315 174 PRINTS Tubby superfamily signature 130 149 IPR000007 -
Arst7g03315 174 PANTHER TUBBY-RELATED 3 171 - -
Arst7g03315 174 Gene3D Tubby Protein; Chain A 1 173 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g03315 Arst-Chr7 78587918 78589594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g03315 1 172 TUB Transcription Factor Family AT2G18280 31.163 4.34e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst7g03315 Tub 8.7e-33 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g03315 K19600 - gmx:100803500 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g03315 7 78587918 78589594 Arst7g03315 7 78587918 78589594 ECH