LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst7g03306	ATGAGGAAACTAAGATTTAATCTAAAGGGACTAGGGCCGCTTCCTCCGACTGGTGGGAGTGGCGGAATAAGGAGAAACGACAATGCATCAAAATCTTTTGGGGTAGGAATGAGAAGGGGATCGAATGGGCTAAGAGTACTTGGGAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTTCCGGAAGATCTTAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACTCTTCTGCAGTGGAATAAATTCTTTCAAGTTTTGTGTATCATATCTGTATCTTTTGATCCCCTTTTCTTTTATCTCCCATATTTCAATCACAAATCATTCTGTCTCGCCATAGACAGCAGCCTGGCAAGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATCTACATCCTTCGCATAAGTTTCCAGTTTCGCACTGCTTTCATTGCGCCTTCTTCTCGTGTCTTTGGACGGGGTGAACTCGTCATAGATCTTGCAGAAATTGCTAAGAGATATTTGCAACGTTACTTTATTGTTGACTTCCTCTCTGTGTTGCCTTTGCCACAGATTGTCGTGTGGAGATACCTTCATGATCCAGCGCGCACAAAGGTATTAGCTACAAAAACGCAACTGTTGAACATTGTCATCCTCCAATATTTTCCAAGATTTCTACGCTTTCTACCTTTGGCCTCAGAGATTAGCAAGACAGCAGGTGTTTTTTCGGAGAATGCTTTGGTCGGCGCCGCATATTACTTGACCTGGTACATGCTTGGCAGCCACATAACTGGGTCTGTATGGTACTTATTAGCTGTAGAACGTAATGACACGTGCTGGAGGAATGCTTGCATGGAGGAAGAGCAATGTTTCACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGAAAGATTAGCCCAACGATTCTTAGGAATAAGTGTTCCGCTGATGATGACGACGCCCCATTTGACTATGGAATTTTCAATCAAGCAATAACATCTAATATTGTTGCATCAATCAATTTCTTTCCTAAACTATGTTATTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTCAAGCTAGCACCTACGTTGGAGAAATTCTATTTTGCATTATATTAGCTGTTTTGGGGCTTGTCCTTTTTGCTGTTTTGATTGGAAAGATGCAGAACTTTCTTCAATCGATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCAGAGCAATGGATGCACCACCGCTTGCTTCCACCGGAGCTAAGGGAAAAAGTTAGACGCTATGATAAATGTAAATGGTTTAACACACGTGGAGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCCAAAGATCTGAGGAGAGACATCAAAAGATACCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTGTTTGCCAATATGGATGAGCGGTTGCTAGATGCGATATGCGAGCGGCTGAAGCCGTGTCTGCATACAAAGGGGACGTGCATAATAAGGGAAGGGGATCCGGTGAATGAGATGTTGTTCATCGTACGTGGGCAACTTGAGAGTGTGACGACGGACGGCGGAAGAAGTGGATTCTTCAACAGAGGTTTTCTGAAAGAAGGTGACTTCTGTGGAGAAGAGCTGTTAACATGGGCACTGGACCCAAAATCATCGTCGAATTTACCGTCATCTACAAGGACTGTGAAGGCCATGGATGAAATGGAAGCATTCGCTTTGGAGGCAGAGGAGCTCAAGTTTGTTGCTTCCCAGTTCAGGCGCCTTCACAGCAGGCAGGTTCAGCACACATTCCGTTTCTACTCCCAACAGTGGCGGACTTGGGCTGCCATCTTTATCCAGGCTGCCTGGAGGCGCCACCAGAGGAGGAAAATTGCATCCCTGCACCACATCAACAAGCCTGATGATGACGACGATGATGATCAATCCCATCATGATGATGACAACGACGACGATGATGATACAAAGGCCTTGATTCCATCTTCTTCGTCTTCATCTTCTACTGCTAATACTACTACTGCTGCTGCTGCTACTTCTACTATGCTTATTGGGTTAGATTCGGCTATGTATGCTTCCCGGTTTGCAACTAATCTGCGTGGGCAGAGGCCCCGTTCTTCCAGTTCGGAGGGCATCGGCCTTCCCCCCCAAAAGCCTCGAGAACCCGACTTTAGCCATCTTGATGATGATGACCCACGCTAA	2235	0.4532	MRKLRFNLKGLGPLPPTGGSGGIRRNDNASKSFGVGMRRGSNGLRVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVLCIISVSFDPLFFYLPYFNHKSFCLAIDSSLASYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDLAEIAKRYLQRYFIVDFLSVLPLPQIVVWRYLHDPARTKVLATKTQLLNIVILQYFPRFLRFLPLASEISKTAGVFSENALVGAAYYLTWYMLGSHITGSVWYLLAVERNDTCWRNACMEEEQCFTHFLYCGGSNKRATGYEEWRKISPTILRNKCSADDDDAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLQASTYVGEILFCIILAVLGLVLFAVLIGKMQNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPPELREKVRRYDKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMDEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHQRRKIASLHHINKPDDDDDDDQSHHDDDNDDDDDTKALIPSSSSSSSTANTTTAAAATSTMLIGLDSAMYASRFATNLRGQRPRSSSSEGIGLPPQKPREPDFSHLDDDDPR	744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst7g03306	744	Pfam	Ion transport protein	83	409	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Arst7g03306	744	SUPERFAMILY	cAMP-binding domain-like	412	602	IPR018490	-
	Arst7g03306	744	MobiDBLite	consensus disorder prediction	710	724	-	-
	Arst7g03306	744	Pfam	Cyclic nucleotide-binding domain	505	592	IPR000595	-
	Arst7g03306	744	FunFam	Cyclic nucleotide-gated ion channel 1	409	473	-	-
	Arst7g03306	744	CDD	CAP_ED	482	613	IPR000595	-
	Arst7g03306	744	Gene3D	-	84	404	-	-
	Arst7g03306	744	Gene3D	Jelly Rolls	480	600	IPR014710	-
	Arst7g03306	744	FunFam	Cyclic nucleotide-gated ion channel 1	480	598	-	-
	Arst7g03306	744	Gene3D	Helix hairpin bin	405	473	-	-
	Arst7g03306	744	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	64	735	-	-
	Arst7g03306	744	MobiDBLite	consensus disorder prediction	9	31	-	-
	Arst7g03306	744	MobiDBLite	consensus disorder prediction	708	744	-	-
	Arst7g03306	744	ProSiteProfiles	cAMP/cGMP binding motif profile.	482	579	IPR000595	-
	Arst7g03306	744	SMART	cnmp_10	482	613	IPR000595	-
	Arst7g03306	744	SUPERFAMILY	Voltage-gated potassium channels	75	404	-	-
	Arst7g03306	744	MobiDBLite	consensus disorder prediction	640	683	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst7g03306	Arst-Chr7	78527054	78529779	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst7g03306	21	735	Ion Channels	AT1G15990	63.750	0.0	920

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst7g03306	K05391		-	gmx:100810453	1018.84