Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g03281 ATGTCTACTAGCTGGCGTTCCAGCACTGCCGTTTCATCACCGCCAATCCCAATTCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATTCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTCGGCGTCCCCAATCACATGACCTACGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTCAAGCATTACAATGGCCGCCGTTTCTCCTCTCTGGAGGTTGAGATTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTCACTACTATATGTAATCATTCTTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCGATATGTTCTGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGATTTGTTGGTTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTGCTATGCCCTAGACGTGGAAACTAAGCGTGTGTGGGATTTTGCGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATAAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCAATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTCGTTGTTACAAGAGGTAAAAGAAGAAACTGAGACAAAAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGATGA 1263 0.4537 MSTSWRSSTAVSSPPIPIPIPIPIPIPNEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDSPSTLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLHHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFKHYNGRRFSSLEVEICRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHCYALDVETKRVWDFAGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSISEALLNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETETKISKAVQKAVSLKQQKIQAKIDRCNKEKKFLEELNENLVKNEDAWKAKLLEIEER 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g03281 420 SMART Zf_UBP_1 227 276 IPR001607 GO:0008270
Arst7g03281 420 CDD RRM_BRAP2_like 75 156 - -
Arst7g03281 420 Pfam Zn-finger in ubiquitin-hydrolases and other protein 228 287 IPR001607 GO:0008270
Arst7g03281 420 CDD RING-H2_BRAP2 175 218 IPR047243 -
Arst7g03281 420 Pfam Ring finger domain 176 217 IPR001841 -
Arst7g03281 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 293 IPR013083 -
Arst7g03281 420 SUPERFAMILY RING/U-box 193 292 - -
Arst7g03281 420 PANTHER BRCA1-ASSOCIATED PROTEIN 32 420 - -
Arst7g03281 420 SMART ring_2 177 216 IPR001841 -
Arst7g03281 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 213 IPR013083 -
Arst7g03281 420 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Arst7g03281 420 ProSiteProfiles Zinc finger UBP-type profile. 211 304 IPR001607 GO:0008270
Arst7g03281 420 Coils Coil 342 420 - -
Arst7g03281 420 Pfam BRCA1-associated protein 2 69 164 IPR011422 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g03281 Arst-Chr7 78417910 78423205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g03281 173 217 C3H Transcription Factor Family AT1G72220 48.936 2.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g03281 K10632 - gmx:100794688 726.472