Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g03114 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGTTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCATACGATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCTTATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGGCGTTGCAGCTACGCCGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGTTTCATGGATGATGTCAGAGGTCCATACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTGATGGATACTGCGTCTTTTCCTCTGCGTGTCCCTTCGTTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACAGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACAAATCCCTCACACGGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCTAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGATACTATTGGTCACCGAAATATCCCCCCCATGGGTTTCCTTCATGTTGATGATGTCGCTTTAATCGACGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTTCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACCGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4682 MDKMIASEMDQHRQVYFHSEPGILPRGTGISHPNIHTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMGVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHGAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHDTIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYFKPISATNSDEAALDDREADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g03114 523 SUPERFAMILY RING/U-box 465 517 - -
Arst7g03114 523 Pfam Ring finger domain 469 512 IPR001841 -
Arst7g03114 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Arst7g03114 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 516 IPR013083 -
Arst7g03114 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 102 516 IPR045191 GO:0061630
Arst7g03114 523 SMART ring_2 471 511 IPR001841 -
Arst7g03114 523 FunFam E3 ubiquitin ligase BIG BROTHER 431 516 - -
Arst7g03114 523 CDD RING-H2_RNF24-like 469 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g03114 Arst-Chr7 77372189 77375861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g03114 388 516 C3H Transcription Factor Family AT2G15530 44.444 1.04e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g03114 K19041 - gmx:100800642 687.182