Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g03034 CCAGGTCCACGTGAACTTCCCAACCAGTGTCTGATAAAGCGAAACAAGAAGACCTCGACATTTTATCTATATCTTGCCTTAACACCATCATTCACAGACAAAGGGAAGTTTTTGTTGGCGGCTAGAAGATACAGGTTTGGTACCCATACTGAATATATAATATCACTTGATGCCGAGGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTACGACAGTCAACCACCCCATGCTGGTGCAAAACCATCGAGTGGCAGGTCTAGTCGCCGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAAGTGGGGCAGGTCTCCTACAAGTTCAACCTCTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCCCTCAAGTGTCCCGCAACACCATTGGGAGAAACTTCAGATATCACATCATTGGACGGCAACAAGACAAACAGTAAAGATCAAGCTACTCCTACCTGCACAGTCTTGAAGAACAAAGCACCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGCCGCGTGACAGTAGCATCCGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGACACGGTTCTCCTGCAGTTTGGCAAAGTGGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCCTTTCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 801 0.4682 MSLRKVFRSRKFSKSFMEVNAAVAPKVEGGEKKEEAGEEGNAWSGMLPELLGEIIRRVEVEEEQWPQRQNVVACACVCKRWRDMTREIVGQPHNNGKITFPSCLRKPGPRELPNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRFGTHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHAGAKPSSGRSSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPATPLGETSDITSLDGNKTNSKDQATPTCTVLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEDTVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g03034 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
Arst7g03034 372 Pfam Tub family 104 367 IPR000007 -
Arst7g03034 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
Arst7g03034 372 CDD F-box_AtTLP-like 43 87 - -
Arst7g03034 372 Gene3D Tubby Protein; Chain A 99 372 IPR025659 -
Arst7g03034 372 Pfam F-box domain 44 88 IPR001810 GO:0005515
Arst7g03034 372 MobiDBLite consensus disorder prediction 193 214 - -
Arst7g03034 372 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
Arst7g03034 372 PANTHER TUBBY-RELATED 38 370 - -
Arst7g03034 372 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Arst7g03034 372 PRINTS Tubby superfamily signature 174 198 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g03034 Arst-Chr7 76447222 76450210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g03034 1 372 TUB Transcription Factor Family AT1G53320 71.842 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst7g03034 Tub 2.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g03034 K19600 - gmx:100808096 623.239