Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02640 ATGGGGAGGAAAAAAAGTAAACCTCATCGATCAGGGGGGTTAATAGTTGAAACAAATTCTACTGCTGAAGCAGAATTGGATAAGCAGAATGTTGAAGGGACAAATAAAGGAGGAAATGATGATTTTGTTGAAGTTGATATACCCTATTTTGTTGAAGTTGATCGGTCTGGTTGGTTGTCAGGTGAGCACCTTGATGTTTCTGAGGTTGTCTTGAGGGATTTAAATTTGAGAGAAGGGTTTTCTGGTTTTGAACTGTGTGAGGATTTTTACCAGGATCCACGGTACTTGTTGAGATTTCGAGTGTCTAATGTCAATAATGTTCTTAGTCGAATCAAGTTAGGTCATTGGCCCGTGTTACCCTATACTGATATTCATCTAGAGTTTGTGAAAAGGGATGCAATAGACAATTTGGAACAATGTACCGTGCTGTTGTCTGGGATTTTTGATGGACCGGATGAAGGTGTTTCTGGCCTTGTTCACTTGGCAAGTTTGAAATTTTTCACATTGAGGCCAGTTCTTGGGATTAGGATTTCGGAAGATATTTCTTCTCTCAGGGTAAGAGTTGAAATACTAAAGTGTGCCTTTGATGCTTGTGAGTCACTTCTTGATGTGTCTAGGCAACTATGGAAAAGGAGTATGATGAATGTCATGTCTTGGCTACGTCCAGAAATAGTAACTTCAGAAGTTAGGTATGGATTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGGCAGAGACCGGAAATAACACATCCAGCAACAGAAAACACACAAGATTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAATCTGAGCCAATGCTTGAAGATGACATACCTGAGTTACTTCCTGAACTGAGGCCTTATCAACGACGTGCAGCTTTCTGGATGGTTGAACGGGAGAAACAAATGGAAGAAAGTCAGCGTGAAAGAGAAAGAATTCAGTTTCATTCTCCATTATGCATGCATTTGGATTTTCTGGATACAAGTACTAAAATGTTTTTCAATCCATTCAGTGGGAATATTTCTTTGTGCCCGGAGACATCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTACTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGAAAGTGATATACTAGTTGAACCAGTGCCTCAAGTTAATGAAGACCAAAATGTCACTTTAAAAAGACTCAAAAGGGAGCGTGTGGAGTGTATCTGTGGATCTGTGAGTGAAAGTCTCAAATATGAAGGACTATGGGTTCAATGTGACATTTGTGATGCTTGGCAGCATGCTGATTGTGTTGGTTATTCAGCTAGAGGAAAATCACTGAAATCAAGACATGGATGTGAAGGCAAGACATATAAAACCACAATAGCTGTAAGGGATGGTGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGTGACTGAATCTCCCATTGCATCGGGTGCCACTCTTATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATAATGAAATTATACGGTACACTAATCCCTTATCTCTGTTTGTGTGTTATATGTTATACGTCTGGGGGGTTTCTGGTCTCTCTCCATTTTATGAAGGCGTGCGGGAGACTTCTTTATCCAACACATCTATAATGGATATCAGTGAACTCGCCACTGCTGACATTGTGTTAACTACATATGATGTGCTTAAAGAGGATTTATCCCATGATTCTGATAGACATGAAGGTGATCGACACTTTTTGAGATTTCAAAAGAGGTACCCAGTTGTCCCAACTCTTCTCACCAGGATATATTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAAAGTAATACTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCTAAGCATCATTGGTGCATAACAGGAACCCCAATTCAGCGCAAGCTTGATGATTTATATGGGCTGCTAAGGTTTCTTAAAGCTAGCCCTTTCAATACATACAAGTGGTGGACTGAAGTTATTCAAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCTTCTCAGGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAAGAGCACTTTTATCAGAGGCAACATGAAACCTGTGTCATAGATGCCCACGAAGTTATTGAAAGTTTGAGAAATGATATCCTTAATAGAAAAGGCCCAGGTTCTGCATCTTTAAATAGTTTGTCAGATTCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTGAATGCTCTGCTGAAACTTCGTCAGGCTTGTTGTCACCCGCAAGTTGGGAGTTCTGGTCTGCGGTCCCTCCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTTAGAAGGTTAGTTGTTGCTCTGAACGGGCTTGCAGCAATAGCAACAATACAAAACGAATTATCTCAAGCTGCATTGCTGTACCACGAAGCTCTGACGTTGGCTGAAGAGCATTCTGAGGATTTCCGCTTGGATCCTTTGTTGAATATCCACGTTCATCATAATCTTGCCGAAATGCTCCCACAGGCTGCAGACCTTGCCCTGAGAGTGTCCTCTAAAGAAAAGCAGTTCTCTCGAACATCCAGAAAGCATTTTATTGACAAGGTTGATCATTGTCTTTTGAAGAGGCAAAAAGTAAGTGGCTGTGATGACACAAAATTTTCGGCGGCTTCGGTAGAACTATCCAATTCTGCATCCAGCCTTTCAGAAGATGACTTAAATGAGAATCAGGATGTTGATGATGTAGCTGTCTGCACTGTCGAATCTCTGAAAGCAGAATGTGAATATTTGAAGCAGAAATACTTATCCGTGTTCAGTACAAAGCTATGTGCAGCTGAACAGGAGTTTCAAAACTCATACATGCAGGTTAGTAATGGATTTAGTGACAGCAAAGCAGATCAAAAAATGTTTTGGTGGCTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTCTCAGCCGAGTTGTCTAGAAAGATTGAAGAAGCGATCTCAGCAGCTGCAAATAGTTCAAAGTCATCAAAAATAGCTGCTCGTTTTCGGAGCATATCATCTCTGAAGTATCAAATTCAGACAGGCTTGGATCAGTTAGAGACCTCTCGGAAAGGTCTATTAGATCGACTGCTAGAAATTGACCAAACAATGGAAAAACCAAATGAAGAAGATATTGACCGTATGGGTAAATGTCAAACTTGCCAACCTAATTGTGATGGTCCCCCATGCATTCTGTGTGAACTAGATGAACTCTTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGCGGAATAATTTCATCCGCTGAGGAGGCAGTAGATCTTCAGAAGAAGAATTTCGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGCATCTCAAATTGATAATGAAGAATCAAAGAAAAGGAATGTTGGACAGAGAGTTGTGGTTTCAAGATCAGCATCTGAATTGGAGCTTATTCTCGGTGTTATAAAGAACTATTGCAAGGGTCGATTGGGAAGGGACATTGTCACAGCAGCAACCAAGCATTTACATGTTTTTGAGGGAATGAGGAAGGAGTTTGGCTATGCGAGATCTTTAGCTCTAGCTCAAGCTCAGTACCTACGGGCCCATGATGAAATAAAGATGGCTGTTTCCCGTTTGCACTTAAGGGCAAATGAGGATGATAAATCTCTTGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAGCTTTTCGCATGATAAGTTTATGTCGTTGAACATGTTGTCACAGATAAAAGGAAAGCTCCGCTACTTAAAGGGTTTGGTAGAATCTAAGCAAAAGCTGCCATTGGGAAGTCCAGATAGTTCTTCATTAACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGATGAAGAAACATGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATGTTACGTGCTGCAAATGTTTATTTGCTATGACTGAGAATAGGCTTCAACATAGCAAGATTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAAGGAATCTTCTAATTCTGTAACACCTAATACACTTGACAACTGTGAAAAAAGTGAAGCATCCATTACTGTCAAAGGCTCATATGGAACTAAGATTGAAGCTATCACTAGAAGAATCTTGTGGGTAAAGGCTACAGATCAAAAAGCAAAAGTTCTTGTGTTTTCTAGTTGGAATGACGTACTTGATGTATTGGAGCATGCCTTTGCTGCAAATGACATTACATTCATCCGCATGAAAGGAGGCAGGAAAGCACAAGTTGCTATCAGTCAATTTAGAGGACACGAGAGTGGCAAGAAAGGTGAGAGGCCAGTGTCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTCTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCGGCTGCTGAAGCACAAGCGATCAGTCGTGTACATCGTATCGGCCAAAAGAACAAGACCCTCATTCATCGTTTCATTGTCAAAGACACTGTAGAAGAGAGCATATACAAGCTAAACAGAGGCAGGAGCAATCATTCATTCATTAGTGGGAACACAAAAAATCAAGATCAACCTGTTTTGACTCTGAAGGATGTGGAATCCTTACTATCAAGAGCCCCACTAATAATGCCAGAAGCTGATGAAAATGGCAACACAAATTCAAATCTAAGGCATTTGCCGCCATCAATGGCTGCGGCGATTGCCGCTGAGAGAAGAGTCAACGAGCAAACATGA 5034 0.4122 MGRKKSKPHRSGGLIVETNSTAEAELDKQNVEGTNKGGNDDFVEVDIPYFVEVDRSGWLSGEHLDVSEVVLRDLNLREGFSGFELCEDFYQDPRYLLRFRVSNVNNVLSRIKLGHWPVLPYTDIHLEFVKRDAIDNLEQCTVLLSGIFDGPDEGVSGLVHLASLKFFTLRPVLGIRISEDISSLRVRVEILKCAFDACESLLDVSRQLWKRSMMNVMSWLRPEIVTSEVRYGFGSCMKMEVDPQAETGNNTSSNRKHTRFDPAGFYEAIKPSKSEPMLEDDIPELLPELRPYQRRAAFWMVEREKQMEESQRERERIQFHSPLCMHLDFLDTSTKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASESDILVEPVPQVNEDQNVTLKRLKRERVECICGSVSESLKYEGLWVQCDICDAWQHADCVGYSARGKSLKSRHGCEGKTYKTTIAVRDGEYVCQMCSELIQVTESPIASGATLIVCPAPILPQWHNEIIRYTNPLSLFVCYMLYVWGVSGLSPFYEGVRETSLSNTSIMDISELATADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNTAAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNTYKWWTEVIQDPYEKGDMGAMEFTHRVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVIDAHEVIESLRNDILNRKGPGSASLNSLSDSLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQNELSQAALLYHEALTLAEEHSEDFRLDPLLNIHVHHNLAEMLPQAADLALRVSSKEKQFSRTSRKHFIDKVDHCLLKRQKVSGCDDTKFSAASVELSNSASSLSEDDLNENQDVDDVAVCTVESLKAECEYLKQKYLSVFSTKLCAAEQEFQNSYMQVSNGFSDSKADQKMFWWLEALHHAEQNKDFSAELSRKIEEAISAAANSSKSSKIAARFRSISSLKYQIQTGLDQLETSRKGLLDRLLEIDQTMEKPNEEDIDRMGKCQTCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNHFLSKLSKSNHRATASQIDNEESKKRNVGQRVVVSRSASELELILGVIKNYCKGRLGRDIVTAATKHLHVFEGMRKEFGYARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGEDELFAASSSFSHDKFMSLNMLSQIKGKLRYLKGLVESKQKLPLGSPDSSSLTQEITALPNSTEERGAVIFKADEETCPICQEKLGSQKMVFQCGHVTCCKCLFAMTENRLQHSKIHNWVMCPTCRQHTDFGSIAYAVDAQKESSNSVTPNTLDNCEKSEASITVKGSYGTKIEAITRRILWVKATDQKAKVLVFSSWNDVLDVLEHAFAANDITFIRMKGGRKAQVAISQFRGHESGKKGERPVSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRGRSNHSFISGNTKNQDQPVLTLKDVESLLSRAPLIMPEADENGNTNSNLRHLPPSMAAAIAAERRVNEQT 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02640 1677 SUPERFAMILY RING/U-box 1361 1418 - -
Arst7g02640 1677 CDD PHD_TCF19_like 416 481 - -
Arst7g02640 1677 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Arst7g02640 1677 SMART PHD_3 414 482 IPR001965 -
Arst7g02640 1677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 463 IPR013083 -
Arst7g02640 1677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 1638 IPR027417 -
Arst7g02640 1677 SMART helicmild6 1491 1582 IPR001650 -
Arst7g02640 1677 Gene3D - 1428 1671 IPR027417 -
Arst7g02640 1677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1463 1633 IPR001650 -
Arst7g02640 1677 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Arst7g02640 1677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 699 IPR027417 -
Arst7g02640 1677 CDD SF2_C_SNF 1457 1593 - -
Arst7g02640 1677 Pfam SNF2-related domain 292 797 IPR000330 GO:0005524|GO:0140658
Arst7g02640 1677 Gene3D - 346 399 IPR038718 -
Arst7g02640 1677 SMART ring_2 1366 1413 IPR001841 -
Arst7g02640 1677 Pfam Helicase conserved C-terminal domain 1460 1582 IPR001650 -
Arst7g02640 1677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 663 IPR014001 -
Arst7g02640 1677 ProSiteProfiles Zinc finger RING-type profile. 1366 1414 IPR001841 -
Arst7g02640 1677 SMART ultradead3 285 671 IPR014001 -
Arst7g02640 1677 ProSiteProfiles Zinc finger PHD-type profile. 412 484 IPR019787 -
Arst7g02640 1677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1676 - -
Arst7g02640 1677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1676 - -
Arst7g02640 1677 Gene3D - 464 722 IPR038718 -
Arst7g02640 1677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1353 1427 IPR013083 -
Arst7g02640 1677 CDD DEXQc_SHPRH 289 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02640 Arst-Chr7 66255349 66269257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02640 489 795 RAD5 or RAD16-like Gene Family AT5G22750 29.487 6.84e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst7g02640 SNF2_N 3.4e-84 CL0023