Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02533 ATGGGGAGAGGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGATCGATACAACAAAACCAAGGAAGAACTAGATCAGCTTGGGAGTTCAACCTCTGAAGTTAAGTTTTGGCAACGGGAGGCGGCAATGCTAAGGCAACAATTGCTAAGTTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTGTCAGGTTTGACAATCAAAGATTTACAGACTTTGGAGAACCAGTTGGAAATTAGCCTTCGCGGTGTCCGTACAAAAAAGGATCAGCTTTTAATGGATGAAATACAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGATCTATACGAGAAGATAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGGTATATGTAACAAAAGATCAGAATGTGGAGAATAGAAATTCTGTCCTCACAAACAGTCTAGCCATAAAAGACGATTCTCAAGTTCCTGTGTGTCTCCAACTAAGCCAGCCACAATAA 666 0.4174 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVVDRYNKTKEELDQLGSSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKINLIRQENMELKKKVYVTKDQNVENRNSVLTNSLAIKDDSQVPVCLQLSQPQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02533 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Arst7g02533 221 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Arst7g02533 221 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst7g02533 221 Coils Coil 163 183 - -
Arst7g02533 221 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Arst7g02533 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g02533 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst7g02533 221 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Arst7g02533 221 Coils Coil 86 106 - -
Arst7g02533 221 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02533 Arst-Chr7 63764507 63773507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02533 1 221 MADS-box Gene Family AT4G37940 61.712 1.86e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst7g02533 K-box 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02533 K09264 - gmx:100812413 363.614