Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02532 ATGGGGAGAGGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGATCGATACAACAAAACCAAGGAAGAACTAGATCAGCTTGGGAGTTCAACCTCTGAAGTTAAGTTTTGGCAACGGGAGGCGGCAATGCTAAGGCAACAATTGCTAAGTTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTGTCAGGTTTGACAATCAAAGATTTACAGACTTTGGAGAACCAGTTGGAAATTAGCCTTCGCGGTGTCCGTACAAAAAAGGATCAGCTTTTAATGGATGAAATACAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGATCTATACGAGAAGATAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGAATGTGGAGAATAGAAATTCTGTCCTCACAAACAGTCTAGCCATAAAAGACGATTCTCAAGTTCCTGTGTGTCTCCAACTAAGCCAGCCACAATAA 645 0.4217 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVVDRYNKTKEELDQLGSSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKINLIRQENMELKKKNVENRNSVLTNSLAIKDDSQVPVCLQLSQPQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02532 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Arst7g02532 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 Coils Coil 163 183 - -
Arst7g02532 214 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g02532 214 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Arst7g02532 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g02532 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst7g02532 214 Coils Coil 86 106 - -
Arst7g02532 214 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Arst7g02532 214 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst7g02532 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02532 Arst-Chr7 63764504 63773507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02532 1 214 MADS-box Gene Family AT4G37940 62.963 1.63e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst7g02532 K-box 7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02532 K09264 - gmx:100812413 347.436