Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02529 ATGTCATCAGAAGAAGCAATGCAGTTGCGCATCGAAGACAATCATGTGGTTATGGACAATGGCATACTACAAGTTTATTTGTCGAAACCGAGTGGATTTGTCACCAGAATACAATATAATGGCATTGATAATCTGCTGGAAGCTGGAAATGAAAAATTCAACAGAGGGTATTGGGACGTTGTTTGGAGTAAAGAAGGAAGTACAGGAACTACCGGGACATTTGAGCGGATTGTAGGAACGAGTTTTAATGTTATAGTGGAAAATGAAGAACAAATTGAAATATCGTTCACAAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCTCTCAACATTGACAAAAGGTATGTGATGCTACGTGATTCCTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTCAACATCCCCCAAATCAGGATCGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCTCTTCCAGAGGACCGATCACCCGGAAGGGGAAAAGTACTCGTTCCCCCGGAAGCAGTTTTGCTTGCTGACCCTGTGGAGCCAGAGTTCAAGGGGGAGGTGGATGACAAGTACCAATACTCGTGCCAAAACAAAGATCTAAAGGTTCATGGGTGGATAAGTTCTAAATCGGAAAGTGATACAGGCACAGGATTTTGGGTAATCATACCTAGCAATGAGTTTCGTTCGGGTGGCCTCACGAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGTTTCTTAGCGCTCATTACGCAGGAGAGGATCTGGTCCTGAAACTCAGTCCAAACGAACCTTGGAAGAAAGTTTTTGGCCCCACTTTTATATATCTTAATGCTTTGTTGGATGGTGAAGACCCACTTGAGCTTTGGGAGGATGCCAAAGATCAGATGAATGAGGAAGTTGAAAACTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAATTTCTAGCGAAAGGGGCAGTGTAAGTGGCACGTTACTAGTTAGAGACAGGATGTTAAGTGACGATTTCATTGGAGCAAGAGGTGCATACGTAGGACTAGCACCACCTGGTGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGAGTATAGCAGATGATGATGGGTACTTCTCAATTGATAATATACGTAGTGGCGATTACAATATCTATGCATGGGTTCCAGGTTTCATTGGAGACTATCGGAGCAATTATCTCCTCACCATAACTCCAGGCTGTGACAAAAACATTAGTGACATTATTTTTGAGCCTCCAAGAGATGGTCCAACTTTATGGGAAATAGGAATTCCAGATCGTTCTGCTGCCGAGTTCTATGTTCCTGATCCCAATCCAAATTACATAAACAAGCTCTATATCGATCATCCAGATAAGTTTAGGCAATACGGCCTGTGGGAAAGATATTCAGAGTTATACCCAAGGGAAGATTTAATTTATACTGTTGGTGTCAGTGATTACAGCAAAGATTGGTTCTTTGCACATGTCACCAGGAAGAAAGATGATGGCACTTACCAAGGCACTACATGGCAAATTAAGTTCGATCTTGCTCATGTGGAGGCAGGTGGAACCTATAAGCTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAATGATGAAAAGCAAGATCCTCCACTATTTACAACCGGGGTTATTGGAAACGACAATGCAATAGCTAGACATGGAATTCATGGACTATACTGGCTATTCAACATTGATGTGCTTGCCCATCAATTATTGGAAGGAAACAATACCATTTATCTAACTCAGGCCATCGCTACAGGCCCCTTTCAGGGAATAATGTATGACTATATTCGTTTTGAGTGTCCCAATTCTTCTTCTGTAAAAGAAATTCAGGTTTAG 1950 0.4236 MSSEEAMQLRIEDNHVVMDNGILQVYLSKPSGFVTRIQYNGIDNLLEAGNEKFNRGYWDVVWSKEGSTGTTGTFERIVGTSFNVIVENEEQIEISFTRMWDPSMEGKLSPLNIDKRYVMLRDSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRSPGRGKVLVPPEAVLLADPVEPEFKGEVDDKYQYSCQNKDLKVHGWISSKSESDTGTGFWVIIPSNEFRSGGLTKQNLTSHVGPISLAMFLSAHYAGEDLVLKLSPNEPWKKVFGPTFIYLNALLDGEDPLELWEDAKDQMNEEVENWPYDFPASEDFQISSERGSVSGTLLVRDRMLSDDFIGARGAYVGLAPPGEAGSWQRECKGYQFWSIADDDGYFSIDNIRSGDYNIYAWVPGFIGDYRSNYLLTITPGCDKNISDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYIDHPDKFRQYGLWERYSELYPREDLIYTVGVSDYSKDWFFAHVTRKKDDGTYQGTTWQIKFDLAHVEAGGTYKLRLALASANVSELQVRVNDEKQDPPLFTTGVIGNDNAIARHGIHGLYWLFNIDVLAHQLLEGNNTIYLTQAIATGPFQGIMYDYIRFECPNSSSVKEIQV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02529 649 CDD RGL4_N 7 298 - -
Arst7g02529 649 Pfam Rhamnogalacturonate lyase family 8 204 IPR010325 -
Arst7g02529 649 Coils Coil 552 572 - -
Arst7g02529 649 Gene3D - 336 436 - -
Arst7g02529 649 Gene3D - 446 636 - -
Arst7g02529 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 640 - -
Arst7g02529 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 640 - -
Arst7g02529 649 Gene3D - 6 276 IPR014718 GO:0030246
Arst7g02529 649 SUPERFAMILY Galactose-binding domain-like 445 637 IPR008979 -
Arst7g02529 649 CDD RGL4_C 450 637 - -
Arst7g02529 649 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Arst7g02529 649 FunFam Rhamnogalacturonate lyase B 336 435 - -
Arst7g02529 649 SUPERFAMILY Starch-binding domain-like 338 433 IPR013784 GO:0030246
Arst7g02529 649 CDD RGL4_M 339 438 IPR029413 -
Arst7g02529 649 Pfam Polysaccharide lyase family 4, domain III 448 635 IPR029411 -
Arst7g02529 649 Pfam Polysaccharide lyase family 4, domain II 361 434 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02529 Arst-Chr7 63676834 63705908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02529 7 640 Polysaccharide Lyase AT1G09890 64.882 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02529 K18195 - gmx:100815677 1082.4