Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02502 ATGGTGAGGCAAAAGATCAAGATAAAGAAGATAGACAACATAACAGCAAGACAAGTAACGTTTTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTCTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCTCAGCATACACATGAGATAAGTAGATCAGAAAGACCTCTTGAACTGCAGCTGGAGAATGTCAATAACGATGAATTACGTAAGGAAGTTGCTGATAAAACTCACCAACTAAGGCAGATGAAAGGTGAAGATTTTCAAGGGATGAACCTACAAGACTTGCTACAACTGGAGAAAGCACTTCAAACAGGATTAAATCGCGTGATTGAGACAAAGGAAAAGCGGATCATGGATGACATCGCAGCACTCCAGAAAAAGGGAGACGAATTAGAACAAGAGAACAAGAAGTTAAAGCAAAAGATGGATATTGGCATGCAAGAAGTGGTGTCATCGGAGTCACTAAATAATGCATGCAGCTGCATCAGTAGTGCCGCTCCTTCTTCTCTTGAAGATCATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCCTTCCCTAATTGA 645 0.4171 MVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSERPLELQLENVNNDELRKEVADKTHQLRQMKGEDFQGMNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGDELEQENKKLKQKMDIGMQEVVSSESLNNACSCISSAAPSSLEDHSSDTSLKLGLPFPN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02502 214 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g02502 214 FunFam Transcription factor, MADS-box 13 83 - -
Arst7g02502 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Arst7g02502 214 Coils Coil 92 112 - -
Arst7g02502 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst7g02502 214 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Arst7g02502 214 Coils Coil 141 175 - -
Arst7g02502 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Arst7g02502 214 MobiDBLite consensus disorder prediction 192 214 - -
Arst7g02502 214 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Arst7g02502 214 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02502 Arst-Chr7 62756521 62766277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02502 1 212 MADS-box Gene Family AT2G22540 52.479 2.55e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst7g02502 K-box 8.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02502 - - adu:107459373 394.43