Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02408 ATGGCGGCGACAACAACCGAAAACATATTGAAAGAAACAATGCAGCGATACGAAGAAGATGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACGGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCGCAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACATAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCCTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGGCAGATCTTCTGTTATCATATGGATATGAAAATGATATAAAATCTTTTACGCCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAACCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTGATCCCAAAAAATGTTCAGCAGTTCTGGATCTCGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAGAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTATTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTCCATATTCTCGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCGAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGTGATTTATCATTTCCTATTTTCCTTTACTCTTGAAGAAAAAACTTGTAAACAACCATAG 1437 0.4148 MAATTTENILKETMQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDRKKQAPNAFVLVPTRELCQQVYIEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWISCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPRSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEVIYHFLFSFTLEEKTCKQP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02408 478 Pfam Helicase conserved C-terminal domain 264 405 IPR001650 -
Arst7g02408 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 237 IPR027417 -
Arst7g02408 478 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Arst7g02408 478 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 236 IPR014001 -
Arst7g02408 478 SMART helicmild6 293 405 IPR001650 -
Arst7g02408 478 CDD SF2_C_DEAD 253 414 - -
Arst7g02408 478 Pfam DEAD/DEAH box helicase 49 225 IPR011545 GO:0003676|GO:0005524
Arst7g02408 478 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Arst7g02408 478 SMART ultradead3 44 256 IPR014001 -
Arst7g02408 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 428 IPR027417 -
Arst7g02408 478 Gene3D - 241 443 IPR027417 -
Arst7g02408 478 CDD DEADc_DDX56 32 238 - -
Arst7g02408 478 PANTHER RNA HELICASE 19 422 - -
Arst7g02408 478 Gene3D - 2 238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02408 Arst-Chr7 59250075 59257683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02408 26 428 Eukaryotic Initiation Factors Gene Family AT3G19760 26.303 1.04e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02408 K14810 - gmx:100800749 748.429