Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g02275 ATGGACCCTAATGCCAAGTCGCCCATAATTGTTTTGTCGCCATTCCCCTTTCCCTTTATTAGCTCCAATACCAATCTCAATTGTACAAACAGACAAGCAACAGCGTTGGATAGAGAGATGAAGATCCAATGTGATGCGTGTGACAAAGACGAGGCATCTCTATTCTGTCCTGCAGATGAAGCCGCTCTCTGCCATGCCTGTGACCTTACAATCCACCATGCTAACAAGCTCGCAATCAAGCACACGCGCTTCACTCTCCACCAGCCTTCCTCCAAAGACACCCCTCGCTGCGATATCTGCCAAGAAAGGCGTGCATATCTGTTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGCGATGTTCCTATCCACAAAGCCAACGAACACACGCAGAACCATAGCAGGTTCCTTCTCACTGGTGTGAAGCTCTCTGGTTCCTCTCTCGACACGGCTTCATCATCATCAGTCACCAGCTCAACTGAGGCAAGAAGCTCCCGTTCAAGAATGAAGAGACCCACTGCTTTCAATAATGAGCACAATATGTCTGCGGCTACTACTAGTAATAGTGACACCGGTTCGGCTTCCTCAAGCAGCATATCCAAATTCTTGATTGAAACCATTCCCGGTTACTGCTTCGAAGACCTTCTCGATGCTTCCTTTCCACATAATAATGGTTTCTAA 684 0.4708 MDPNAKSPIIVLSPFPFPFISSNTNLNCTNRQATALDREMKIQCDACDKDEASLFCPADEAALCHACDLTIHHANKLAIKHTRFTLHQPSSKDTPRCDICQERRAYLFCKEDRAILCRECDVPIHKANEHTQNHSRFLLTGVKLSGSSLDTASSSSVTSSTEARSSRSRMKRPTAFNNEHNMSAATTSNSDTGSASSSSISKFLIETIPGYCFEDLLDASFPHNNGF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g02275 227 SMART bboxneu5 39 86 IPR000315 GO:0008270
Arst7g02275 227 SMART bboxneu5 92 139 IPR000315 GO:0008270
Arst7g02275 227 ProSiteProfiles Zinc finger B-box type profile. 39 86 IPR000315 GO:0008270
Arst7g02275 227 CDD Bbox1_BBX-like 97 139 - -
Arst7g02275 227 CDD Bbox1_BBX-like 44 86 - -
Arst7g02275 227 Pfam B-box zinc finger 42 83 IPR000315 GO:0008270
Arst7g02275 227 Pfam B-box zinc finger 94 131 IPR000315 GO:0008270
Arst7g02275 227 ProSiteProfiles Zinc finger B-box type profile. 92 139 IPR000315 GO:0008270
Arst7g02275 227 FunFam B-box zinc finger protein 21 40 137 - -
Arst7g02275 227 Gene3D Classic Zinc Finger 40 136 - -
Arst7g02275 227 MobiDBLite consensus disorder prediction 147 195 - -
Arst7g02275 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 40 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g02275 Arst-Chr7 52667432 52668869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g02275 40 222 C2C2-CO-like Transcription Factor Family AT1G75540 47.030 3.82e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Arst7g02275 zf-B_box 9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g02275 - - adu:107458960 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g02275 7 52667432 52668869 Arst7g02275 7 52667432 52668869 ECH
Arst7g02275 7 52667432 52668869 Arst3g00719 3 5111726 5113754 ECH
Arst7g02275 7 52667432 52668869 Arst3g00718 3 5110874 5113754 ECH
Arst7g02275 7 52667432 52668869 Arst5g01116 5 11313248 11315579 ECH