LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst7g01925	ATGGCGGTTTCGTTCGCAGCAGTGAACCTTCGGACCATGGCACTCCGATCATCATCGAAGCTTCTCCGTCGTTCTTCCCATCTTCTCCCTCCTATTCACATGCAGCATTCAGCTCCTCCCCTCACTCGAAAGATAAGCATGGATGCTAGGAGCATCGCTTCCCAGCTTAACAGATCTGGTTTATTGAAAACTCAGGGTCTAATTGGAGGTAAATGGAGTGATTCCTACGATGGGAAAACCATACAGGTTTATAATCCAGCAACAGGTGAATCTATAGCGGATGTCGCGTGCATGGGCGGAAAAGAGACAAATGATGCGATTGCTTCAGCATATGATGCATATAGATCTTGGAGCAAAACCACTGCTGCTGAGAGAAGCAAACTTTTGAGGAAATGGTATGATTTACTAATGGCTCATAAAGAAGAGCTTGCTCAACTTATGACCTTGGAGCAAGGGAAGCCTCTTAAGGAGGCTATGGGTGAGGTAAACTATGGGGCTGGCTTTATTGAATTTTCAGCTGAGGAGGCTAAACGCATATATGGGGATATAATTCCTGCTCCTATGTCTGATCGACGGTTATTTGTTCTAAAGCAGCCTGTCGGGGTTGTAGGTGCGATCACACCATGGAACTTCCCCCTGGCTATGATCACACGGAAGGTTGGTCCAGCTCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCATTAGCTGCAGCTGAACTTGCTATTCAAGCTGGAATACCTGCGGGTGCTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGTGATGCTTTACTTGCAAGTCCTCAGGTACGCAAAATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCTGAGACAGTAAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCGTGCATAATTTTTGATGATGCTGACATTGATATTGCAGTTAAAGGAACTCTTGCAGCAAAGTACCGCAATAGTGGACAAACATGTGTGTGTGCGAACAGAATTCTTGTGCAAGAAGGTATATATGATAAATTTGCAAAGGCTTTGATTGATGCTGTTCGGAATATGAAAGTTGGGGACGGTTTTGGTGAAGATGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCAGTTAAAAAGGTTGAGACCTTGCTTCAAGATGCTACATCAAAGGGGGCAAAGGTAATGCTTGGGGGTAAAAGACATAGCCTTGGATTTACCTTTTATGAACCAACAGTTGTCGGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGTGTTTGGACCTGTTGCACCCCTTTTGAGGTTCAAAACCGAAGAGGATGCTATCCGGATTGCCAATGACACAAATGCAGGTTTGGGTTCATATGTGTTTACAAACAGTATCCAACGCTCATGGCGTGTTGCCGAGGCTCTCGAATATGGACTTGTTGGTATTAATGAAGGAGTAATCTCGACTGAGGTGGCACCATTTGGTGGTTTTAAACAGTCGGGCCTTGGAAGAGAAGGCTCAAAGTATGGGATGGATGAATATTTGGAGATCAAGTATGTGTGCCTGGGAAACATGAAGAAAGAATAA	1620	0.4488	MAVSFAAVNLRTMALRSSSKLLRRSSHLLPPIHMQHSAPPLTRKISMDARSIASQLNRSGLLKTQGLIGGKWSDSYDGKTIQVYNPATGESIADVACMGGKETNDAIASAYDAYRSWSKTTAAERSKLLRKWYDLLMAHKEELAQLMTLEQGKPLKEAMGEVNYGAGFIEFSAEEAKRIYGDIIPAPMSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELAIQAGIPAGAVNVVMGNAPEIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIIFDDADIDIAVKGTLAAKYRNSGQTCVCANRILVQEGIYDKFAKALIDAVRNMKVGDGFGEDVVQGPLINEAAVKKVETLLQDATSKGAKVMLGGKRHSLGFTFYEPTVVGDVNSDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGINEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMKKE	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst7g01925	539	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	311	500	IPR016163	GO:0016620
	Arst7g01925	539	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	58	536	-	-
	Arst7g01925	539	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	78	525	IPR016162	GO:0016491
	Arst7g01925	539	FunFam	Succinate-semialdehyde dehydrogenase I	78	320	-	-
	Arst7g01925	539	Pfam	Aldehyde dehydrogenase family	72	531	IPR015590	GO:0016491
	Arst7g01925	539	NCBIfam	succinate-semialdehyde dehydrogenase	83	529	IPR010102	GO:0009013\|GO:0009450
	Arst7g01925	539	FunFam	Aldehyde dehydrogenase, putative	503	529	-	-
	Arst7g01925	539	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	335	346	IPR016160	GO:0016491
	Arst7g01925	539	SUPERFAMILY	ALDH-like	61	536	IPR016161	GO:0016491
	Arst7g01925	539	CDD	ALDH_F5_SSADH_GabD	83	533	-	-
	Arst7g01925	539	FunFam	Succinate-semialdehyde dehydrogenase I	311	500	-	-
	Arst7g01925	539	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	307	314	IPR029510	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst7g01925	Arst-Chr7	31643041	31654044	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst7g01925	43	539	Aldehyde Dehydrogenase Gene Family	AT1G79440	79.879	0.0	818