Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01563 ATGGCACTTTCTACTACTACACTTCTAGTTGCTCTCTTTGTTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTGGTTGGCAGGGTGCACATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACGAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAGCCTGGCTCCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAACAACAATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCGGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGCCTGGCAAACAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAACGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAAACTTTCCAAGGTGTTCAGTTTTAA 765 0.4575 MALSTTTLLVALFVLLIGINLQGAIADYGGGWQGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTAWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPANWQFGQTFQGVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01563 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Arst7g01563 254 Gene3D - 20 158 IPR036908 -
Arst7g01563 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Arst7g01563 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Arst7g01563 254 PANTHER EXPANSIN-A15 9 253 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Arst7g01563 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Arst7g01563 254 FunFam Expansin 22 158 - -
Arst7g01563 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Arst7g01563 254 CDD DPBB_EXPA_N 31 157 - -
Arst7g01563 254 Gene3D - 162 254 IPR036749 -
Arst7g01563 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Arst7g01563 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Arst7g01563 254 SMART dpbb_1 67 152 IPR007112 -
Arst7g01563 254 FunFam Expansin 162 254 - -
Arst7g01563 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01563 Arst-Chr7 17637040 17639181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01563 8 254 Expansin Gene Family AT2G40610 79.032 4.07e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01563 - - gmx:100777044 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g01563 7 17637040 17639181 Arst7g01563 7 17637040 17639181 ECH
Arst7g01563 7 17637040 17639181 Arst6g01867 6 22547175 22551287 ECH
Arst1g00721 1 7227409 7230831 Arst7g01563 7 17637040 17639181 ECH
Arst1g00721 1 7227409 7230831 Arst7g01563 7 17637040 17639181 PCT