Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01562 ATGGCTAGATCCAAAGTGAAGCTTGCATACATAACCAACGATGCTGCAAGGAGGGTTACATACAAGAAGAGGAAAAGAGGGATGATGAAGAAAATTAGTGAACTAAGCACCCTTTGTGGGGTTGATGCCTGTGCCATAGTCTACAATTCACGTCAAGATGCTCATCCTCTTGACGAGCCCGAAGTTTGGCCCTCCCGCATGGGAGTTGAAAGGGTGATTGAGAAATTCCGGCAATTGCCGGAAATTGATCAAAACAGGAAGAGGATGGATCATGCGGATTACTTGACTCTGAGGATCGCGAAAGAGAAGGAGAAACTGAAGAAGAAAAGGCATGACAACAACGAGAAGGAGTTCCAGCTTCGCATGCATGATTTCATGCTAAGAAATAGGCTTCCAGAGAATCTGAGCTTCTTTGATTTGAATAACTTGGCTTATCATACTGACATGAAGCTTAGGGAGGTCGACATGCGGTTGCAGATGCTTCTGGAAAAAGAGAACAAGGAGATGATGATGGATTTCGCACCGTCGTCACAGCCGATTCATGGTCCTTATCATCCCCTTGAGAGTGGAGAGTCTAGTGGGAAGAACATGAACCATTTTTCATTTATGGAGGAAAACAACCACAACAACTACAATAGTGGTTTTGACATGATTCTTGGAAATGCAAGAATTAACTAA 678 0.4366 MARSKVKLAYITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQDAHPLDEPEVWPSRMGVERVIEKFRQLPEIDQNRKRMDHADYLTLRIAKEKEKLKKKRHDNNEKEFQLRMHDFMLRNRLPENLSFFDLNNLAYHTDMKLREVDMRLQMLLEKENKEMMMDFAPSSQPIHGPYHPLESGESSGKNMNHFSFMEENNHNNYNSGFDMILGNARIN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01562 225 PANTHER MADS BOX PROTEIN 3 134 - -
Arst7g01562 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Arst7g01562 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst7g01562 225 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst7g01562 225 SUPERFAMILY SRF-like 3 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01562 Arst-Chr7 17613892 17615162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01562 1 161 Type I MADS-box Gene Family AT5G48670 47.531 3.38e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst7g01562 SRF-TF 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01562 - - aip:107606857 409.838