Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01416 ATGGTTTTGTCTTGGACAAGAGGGAGGGTGTTCCGGCGCGCTCGGAAGGGGAAGGATCTCCAAGTCAACGATTTAGATGTCGAGATTTCAGTCCCTTCCCACTTCCGGTGTCCGGTCACCCTCGACCTAATGAAGGATCCAGTAACAGTATCCACGGGGATTACCTACGACAGGGACAGTATAGAGAAATGGATCGAGGAAGGGAACAACACGTGCCCGGTAACAAAAAGGGTCTTGACAACCTTTGACATGATCCCCAACCATGCCCTTCGGAGGATGATCCAAGATTGGTGCGTGGAGCACCGTTCTTTTGGAATCGAGAGGATCCCTACTCCGAGGATCCCCGTTACACCGTACGAGGTTTCGGACACGTGTACGAAGATCGTGAATGCCGCGAAACAAGGCGATGAAAACAAGTGCAGGGAGTTGGTGAGGAAGATCAAGGGTTGGGAGAAGGAGAGTGATAGGAACAAGAGGTGCATAGTTGCAAATGGTGCTCCTCTTGCTCTGGTCAACGCCTTTGACTTTTTCTCATCATGGGGTTTTGAGGAGAATAATAATGTTAGTAGTTTGTTAGAGGAGATCTTGGGTGTGTTGGCATGGATGAGGCCTATTGGTGAGGAGGGTAAGTCCATGTTGGGTTCAAAGAATTCAATGAGTTGCATGGTTTGGTTCTTGTTGAAGGGTAATATAGACCTTTCCATAAAGCAAAGTGTTGCCATGTTGCTCAAGGAAGTTCCAATTGAAGTGTTGGCAAATACCCAAGGTGTTGTTGAAGGCTTGGTTAAGATGATTAAGGAGCCTATTGGGAGTGCCTCAATTACAAAGGCATGTTTATCAATGATTTTTAAATTGGTAACATATTCCAAGGGTAAAGATGTAATTTCACAAAGATTTGTGGAATTGGGTTTGGTTGAAGTTTTATTGGAGACAATTGTTGATTGTGATAAAGGGGTGTGTGAGAAGGCCTTAGGAGTATTGGATTCAATTTGTGGGACAAAAGAAGGGAAGGAAATTGCCAAGGCTAATGCTCTTACAATTCCACTTGTGGTTAAGAAACTTCTGAGGGTTTCTGAATTGAGTTCTAGCTTTGCGGTTTCAATTGTTTGGAAGATTTGTGATAAGGCCCAAGAAGAAGAAGGGGTTTTTGTTGAGGCACTTCAAGTTGGGGTGTTCCAGAAGCTTCTTGTTTTGTTGCAAGTTGGGTGTGGTGAGAGCACAAAGGAGAAGGCCACTGAGTTGTTGAAGTTGTTGAATGGTTATAGAAGCAAGGTAGATTGTGTTGATACATCTTTGGAATTTCAGCACCTTAAGAAGCCATTCTAA 1326 0.4442 MVLSWTRGRVFRRARKGKDLQVNDLDVEISVPSHFRCPVTLDLMKDPVTVSTGITYDRDSIEKWIEEGNNTCPVTKRVLTTFDMIPNHALRRMIQDWCVEHRSFGIERIPTPRIPVTPYEVSDTCTKIVNAAKQGDENKCRELVRKIKGWEKESDRNKRCIVANGAPLALVNAFDFFSSWGFEENNNVSSLLEEILGVLAWMRPIGEEGKSMLGSKNSMSCMVWFLLKGNIDLSIKQSVAMLLKEVPIEVLANTQGVVEGLVKMIKEPIGSASITKACLSMIFKLVTYSKGKDVISQRFVELGLVEVLLETIVDCDKGVCEKALGVLDSICGTKEGKEIAKANALTIPLVVKKLLRVSELSSSFAVSIVWKICDKAQEEEGVFVEALQVGVFQKLLVLLQVGCGESTKEKATELLKLLNGYRSKVDCVDTSLEFQHLKKPF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01416 441 CDD RING-Ubox_PUB 32 84 IPR045210 -
Arst7g01416 441 Coils Coil 133 153 - -
Arst7g01416 441 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Arst7g01416 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Arst7g01416 441 PANTHER WDSAM1 PROTEIN 28 423 IPR045185 GO:0061630
Arst7g01416 441 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Arst7g01416 441 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Arst7g01416 441 Gene3D - 122 426 IPR011989 -
Arst7g01416 441 SUPERFAMILY ARM repeat 143 418 IPR016024 -
Arst7g01416 441 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Arst7g01416 441 SUPERFAMILY RING/U-box 27 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01416 Arst-Chr7 14868989 14870582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01416 28 441 U-box Gene Family AT5G37490 45.283 6.18e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01416 - - gmx:100795913 605.134