Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01309 GGAACTTTAGCTTTAACAGGTCGTGACCAAGAAACTACCGGTTTCGCTTGGTGGGCCGGAAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGAGCTCATGTAGCCCATGCCGGATTAATAGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCCGAGAAGCTGTATGAGTAAGGCTTAATTTTACTTCCCCATCTAGCAACTCTAGGTTGGGGGGTAGGTCCTGGGGGGGAGGTTATAGACACCTTTCCATACTTTGTGTCCGGAGTACTTCACTTAATTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCTGAGACTCTTGAAGAATCTTTTCCATTCTTCGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTAGGTATTCACTTAATCTTGTTAGGCATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGTATATATGATACCTGGGCTCCGGGAGGGGGGGATTCCATATTAATAAGATCCGCTAATACCTATTTGGCGACTCTAGGAGCAACAGTTCATGGACATTTTGGAGAAATCTTTTTTGAAGGAGATATATTAGTAATATTTATATATGAAAAATCGAGATCAGGTGATATAACCCAAGGTCTTCCAAAAGTGGAACAGGTATTAGAAGTTCGTTCGATTGATTCAATATCGATTAACCTAGGGAAGAGGGTTGACGCTTGGAACGAACATATAACCAAAATTCTCGGTATTCCTTGGGGATTCTTTATTTGTACTGAGCTAACTATTTTCATTCTGTACAGAATCCCCATGAATAGGACCAAACCTTATTCCATGAGTGGCAGTAAGAGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTATCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGTGCGTTGTAG 1146 0.4154 GTLALTGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPXYEXGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDSILIRSANTYLATLGATVHGHFGEIFFEGDILVIFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLGKRVDAWNEHITKILGIPWGFFICTELTIFILYRIPMNRTKPYSMSGSKSDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAIGVKDRQQGRSSAL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01309 382 Pfam Ribosomal protein S12/S23 284 376 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 Pfam Photosystem II protein 13 175 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Arst7g01309 382 NCBIfam 30S ribosomal protein S12 291 379 IPR005679 GO:0003735|GO:0006412|GO:0015935
Arst7g01309 382 SUPERFAMILY Nucleic acid-binding proteins 295 379 IPR012340 -
Arst7g01309 382 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 302 379 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 PRINTS Ribosomal protein S12 signature 358 374 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 PRINTS Ribosomal protein S12 signature 374 382 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 PRINTS Ribosomal protein S12 signature 306 321 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 PRINTS Ribosomal protein S12 signature 341 358 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 PRINTS Ribosomal protein S12 signature 322 341 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 ProSitePatterns Ribosomal protein S12 signature. 307 314 IPR006032 GO:0003735|GO:0005840|GO:0006412
Arst7g01309 382 CDD Ribosomal_S12 303 374 IPR005679 GO:0003735|GO:0006412|GO:0015935
Arst7g01309 382 Gene3D - 278 381 IPR012340 -
Arst7g01309 382 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 185 272 - -
Arst7g01309 382 SUPERFAMILY Photosystem II antenna protein-like 10 196 IPR036001 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01309 Arst-Chr7 13288177 13291682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01309 285 363 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 37.931 7.83e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01309 K02705 - adu:107457811 749.584