Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01289 ATGGAGAATGGTGGTGAAATGATAAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGGATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGACGGCTTATTAAAAAAAGCAAATGAATTAAAATCTTTATGTGATGCTGATGTTGATTTGATTATATATTCTTCCAATGGAAAAGCCTATTACTATGGCGATTCTTCGTTAAAGACAATGAAAATGGCTCTCTCAAATGAGCAACAACCTCAAGGTAATAATCAGTTTCTTGGTTACATCATCGAGGGAATGTCTAGGATCGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGCTGAGAAAGAACGAGCCAAAACTCTTTCTAAAACTTTAAAGACAATTAAAAATGACAACAACATTATCAATTGGTGGGATACGATTGGTCATAGTTGTGAAAAAAATAAAGAGACGGAAGAAATTCTTGTAGTTCTTCAGCAGACCTTGAAAAATCAAATTTCACACAAGATTGTTGCAAATCAGGCTGCAGTTACAACTGTAACTGAGAGTGTGGCATCTACATTTTATCACGGTGATCAAACCATGGATCAAGTTAATCCCAGAGTTATTGGATCATACCCTACTCATGAAAGTATGAGTACTTTTTCCAACATAGCATTTGCTACTGGTGTCAACTCTTTTGACGCTGCGAGAGAATTCGGTGACCAAAATGCCCCTATTTGGTATCCATCATACCAACACCAACAAGGATATAATGGTCTATTTCTCTACGATGTAAGTAACAGGAATGATGTTGGGAGAAGCAGCGGCGGCGACGATACTGGAAATTATCTTTACTATTCAAATTCTAACCATAATAATGGTAGAGGCTTTTTTGGTTTTCCATACCATAATAATCCATTTAACAATGGTTATGGCAGCGGAAGATTCTTCTAA 960 0.3521 MENGGEMIKKTKGRQKIEIKRIENKKNCQIAFTKRKDGLLKKANELKSLCDADVDLIIYSSNGKAYYYGDSSLKTMKMALSNEQQPQGNNQFLGYIIEGMSRIDMQNLIKKNDSLVDRLNAEKERAKTLSKTLKTIKNDNNIINWWDTIGHSCEKNKETEEILVVLQQTLKNQISHKIVANQAAVTTVTESVASTFYHGDQTMDQVNPRVIGSYPTHESMSTFSNIAFATGVNSFDAAREFGDQNAPIWYPSYQHQQGYNGLFLYDVSNRNDVGRSSGGDDTGNYLYYSNSNHNNGRGFFGFPYHNNPFNNGYGSGRFF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01289 319 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Arst7g01289 319 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Arst7g01289 319 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 168 - -
Arst7g01289 319 SUPERFAMILY SRF-like 13 80 IPR036879 GO:0003677|GO:0046983
Arst7g01289 319 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Arst7g01289 319 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Arst7g01289 319 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Arst7g01289 319 Coils Coil 105 139 - -
Arst7g01289 319 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Arst7g01289 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01289 Arst-Chr7 12941106 12942690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01289 7 171 Type I MADS-box Gene Family AT4G36590 32.941 1.06e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst7g01289 SRF-TF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01289 - - ahf:112762769 512.686