Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01260 ATGTCTTCGCATTGGTGTTACAGGTGCAATAAATTTGTGAGGGTATGGAGGCAGGACATTGTGATTTGTCCAGATTGCGATAGCGGTTTTGTCGAAGAGGTAGATCCTAACACACGCACCGTTTACGCCGATGGCAACCGCGGTCGACGGTTGCCGGCGGCAGCGATGTACATGATAGGCCACCGCAATAATAATGACAACAACAATGTTAGCTTGTCGCGGCAAAATCAACGGCGACACTGCCGGAACACCAATGGCGGTGGCGGAGGAACAGGCGGTGACAGGTCGCCGATCAATCCGGTCATCATGCTCCGCGGCGGCGAGCAATCCGAGGGAACCAGCAGACGCAGGGGGTTCGAGCTTTTCTATGACGACGGCGCCGGTGCCGGTCTCCGTCCCTTGCCACCGAGCATGTCGGAGTTTCTCCTTGGAACAGGCTTCGATAGGGTTTTGGAGCAGTTCTCACATTTCGAAAGGCACGAGCGACACCTTCACCACCACAACCAGCAGCCTCCTCCGGCGTCAAAATCCGCCGTAGAAGGCTTGCCGGAGGTGGAGATCACCGAGAACAACCTCGCCACAGAGCCACATTGCGCAGTTTGCAAGGAAGCCTTCGAGATCGGAACAAAAGCTAAAGAAATGCCGTGCAAGCACATATACCACTCGGACTGCATCTTGCCGTGGCTCGCCCTTCGAAACTCCTGCCCGGTTTGCCGCCACGAGTTGCCCACAGAACAAAACAATAACGAAGATAACAATAACAATGATAACGGCAATAATAACAATGTGGGGCTAACAATATGGCGGTTACCGGGTGGCGGTTTTGCGGTTGGGAGGTTAACCGGTGCAGGAAGAGGGGGATCAGAGAGGGAAAATCTTCTTCCTGCTGTGTACACAGAAATGGATGGAGGAGGACGTGGGAATCATGGTGCTCTTCATCATCATCATTCTTTTCCTTCTTCTTCTTCTCGGAATGGTGATTATCCTAGGCAGTATTCATCATCATCACCTTCAAATAGAAATAGAACTATGACAAATAATGGCACGGCACCTTCCGCTGTCAATTTCGATTTGGATCACTCCCCTTTGCGTCAACGCAGGACTTGGTCTATGGATGTAAATAGTGGTGGTTCTAGAGCTTGGTGA 1146 0.5183 MSSHWCYRCNKFVRVWRQDIVICPDCDSGFVEEVDPNTRTVYADGNRGRRLPAAAMYMIGHRNNNDNNNVSLSRQNQRRHCRNTNGGGGGTGGDRSPINPVIMLRGGEQSEGTSRRRGFELFYDDGAGAGLRPLPPSMSEFLLGTGFDRVLEQFSHFERHERHLHHHNQQPPPASKSAVEGLPEVEITENNLATEPHCAVCKEAFEIGTKAKEMPCKHIYHSDCILPWLALRNSCPVCRHELPTEQNNNEDNNNNDNGNNNNVGLTIWRLPGGGFAVGRLTGAGRGGSERENLLPAVYTEMDGGGRGNHGALHHHHSFPSSSSRNGDYPRQYSSSSPSNRNRTMTNNGTAPSAVNFDLDHSPLRQRRTWSMDVNSGGSRAW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01260 381 SUPERFAMILY RING/U-box 179 248 - -
Arst7g01260 381 MobiDBLite consensus disorder prediction 161 180 - -
Arst7g01260 381 Pfam Ring finger domain 197 239 IPR001841 -
Arst7g01260 381 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Arst7g01260 381 Pfam Protein of unknown function (DUF1117) 263 325 IPR010543 -
Arst7g01260 381 CDD RING-H2_RNF126-like 198 239 - -
Arst7g01260 381 MobiDBLite consensus disorder prediction 299 361 - -
Arst7g01260 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 243 - -
Arst7g01260 381 SMART ring_2 198 238 IPR001841 -
Arst7g01260 381 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Arst7g01260 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 245 IPR013083 -
Arst7g01260 381 FunFam E3 ubiquitin-protein ligase RING1-like 160 245 - -
Arst7g01260 381 MobiDBLite consensus disorder prediction 315 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01260 Arst-Chr7 12402316 12404008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01260 133 255 C3H Transcription Factor Family AT5G01980 39.837 9.37e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01260 K11982 - zju:107413417 378.252