Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g01147 ATGCCCCTAGCTCCCTCTCTCGCCCTAATCTCAAACCCAAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGAGTTGGCGGAGTGGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGAGCAGAGCTCGCAAGATTCTCTGCGATATAAGCATGGACAACAAGGTCACTAAGGATCTCAGCGAAGAGGAACTCATCACTCTTAGAGATAAAGTCTCCAAATACGTCATTGAAGGCGATTTGGGATGGATCATATCATTGAGTCTTCAAGCAGAGATGGGTGAGGAGGTGAAAGCAATTGTTCCCGTGTCTGTGCTTAAGAAGCAAAAGAGGGAAGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCTTGATGCTGCAAAGAAAAAGAGAGCTGAGAGCCGCAAGCTCATTTACAGCAGGGCAAAGCAATATGCAAAGGAATACCAGGAGCAGAAAAAGGAGCTGATAATCGAAGAGACTATGATGCACTGCATTGCCATTGATTTGTCATTGCAGTGA 588 0.4711 MPLAPSLALISNPRPLSRAVYFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDKVSKYVIEGDLGWIISLSLQAEMGEEVKAIVPVSVLKKQKREEEWALKKKEELDAAKKKRAESRKLIYSRAKQYAKEYQEQKKELIIEETMMHCIAIDLSLQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g01147 195 Pfam Ribosomal L30 N-terminal domain 124 179 IPR012988 -
Arst7g01147 195 Pfam Ribosomal protein S13/S18 39 102 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst7g01147 195 ProSiteProfiles Ribosomal protein S13 family profile. 40 154 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst7g01147 195 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 33 104 - -
Arst7g01147 195 SUPERFAMILY S13-like H2TH domain 38 114 IPR010979 GO:0003676
Arst7g01147 195 Coils Coil 161 181 - -
Arst7g01147 195 Gene3D - 38 105 - -
Arst7g01147 195 FunFam 30S ribosomal protein S13 34 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g01147 Arst-Chr7 9974039 9976025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g01147 119 179 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 72.131 3.30e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g01147 K02952 - aip:107620785 202.216