Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00960 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGACAACATTGAAGAAGCAATTCGGCGATTGAAAATCAATGACAATCGAGATAGAGATACTGCGGGTCAAACTAGCCCGTATCCGGATCGTCCTGGTGAACCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGTCGCTACAATCACCCCGCTAATGTTTCACTGGGTACTCATTATGGTGAAGAGCTCCCTGAGAGAAACGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGTAAGTATGGATCATCGTGTAAATATCATCATCCACGGGACAGACGAGGTGCTGCTCCTGTATCATTCAATGCTTTAGGCCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTAGCTTGCAAGTTTCATCATCCGCCGCATGCTACTTTTGGAGCTTCTGGAGTGGCTGCATCTCCTACCTCAATGATCCCCGCATCTGGATATGTTGGTGGATATCCGTATTCCTTACCGAGAATGCCATATTTATCTGGACAGGGCCTTCAGTCTTATGTGCCTCCTTTCTTTTCTTCTCCACAAGGAATTATACCCGGACAGGGTTGGAACAGCTACATGGTAGTAAGTCTTAATCTCCCAGATAGGCCTGATCAGCCAGAATGCAGATACTATATGAACACAGGGACTTGCAAGTATGGATCTGATTGTAAGTTCCACCACCCGAAAGAAAGAATCGCCCAGTCATTCATAAATCCACTCGGCCTTCCTGTGCGACCTGGGCAAGCTATATGTTCTTATTATAGAATTTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATCTCACAGAACTATCGCTTGGCCACACCTACTGCTTTATCTGCACTGGACACCCCTCTCGACGGCAATCGAAGAGGGACTTTCCAACCACCCGAGACATCACCATCTAAATTATCGAGTGATGAGCATCAGCATTCGGATAATAATATCAATAATTCACAGGCCGCTGAAGATTCATCCAAACAAGCTGATCATACTACCTCAAATTCCTTTGAAGTGGCCTCGGAATCCTCCTTACATGACCAAGATGCTTGA 1176 0.449 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDTAGQTSPYPDRPGEPDCLYFLRTGMCGYGTNCRYNHPANVSLGTHYGEELPERNGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAAPVSFNALGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPPHATFGASGVAASPTSMIPASGYVGGYPYSLPRMPYLSGQGLQSYVPPFFSSPQGIIPGQGWNSYMVVSLNLPDRPDQPECRYYMNTGTCKYGSDCKFHHPKERIAQSFINPLGLPVRPGQAICSYYRIYGICKYGPTCKFDHPVLAISQNYRLATPTALSALDTPLDGNRRGTFQPPETSPSKLSSDEHQHSDNNINNSQAAEDSSKQADHTTSNSFEVASESSLHDQDA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00960 391 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Arst7g00960 391 MobiDBLite consensus disorder prediction 323 391 - -
Arst7g00960 391 MobiDBLite consensus disorder prediction 1 20 - -
Arst7g00960 391 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Arst7g00960 391 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Arst7g00960 391 SUPERFAMILY CCCH zinc finger 239 264 IPR036855 GO:0046872
Arst7g00960 391 Gene3D - 121 168 - -
Arst7g00960 391 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Arst7g00960 391 SUPERFAMILY CCCH zinc finger 276 304 IPR036855 GO:0046872
Arst7g00960 391 ProSiteProfiles Zinc finger C3H1-type profile. 235 263 IPR000571 GO:0046872
Arst7g00960 391 Gene3D - 235 320 - -
Arst7g00960 391 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Arst7g00960 391 PANTHER PROTEIN PHOSPHATASE RELATED 22 341 - -
Arst7g00960 391 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Arst7g00960 391 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Arst7g00960 391 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Arst7g00960 391 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Arst7g00960 391 SMART c3hfinal6 235 262 IPR000571 GO:0046872
Arst7g00960 391 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Arst7g00960 391 Gene3D - 46 120 - -
Arst7g00960 391 MobiDBLite consensus disorder prediction 28 47 - -
Arst7g00960 391 MobiDBLite consensus disorder prediction 352 384 - -
Arst7g00960 391 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Arst7g00960 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 262 IPR000571 GO:0046872
Arst7g00960 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Arst7g00960 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Arst7g00960 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 304 IPR000571 GO:0046872
Arst7g00960 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00960 Arst-Chr7 7322527 7326625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00960 1 382 C3H Transcription Factor Family AT1G04990 45.368 9.76e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst7g00960 zf-CCCH 4.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00960 - - gmx:100812856 580.096