Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00742 ATGTCAAGTGGAGCAACGCACTGGTGTTACGAATGCAGGCAGCCAATCGTGCTCGGAGGGAGGGATGTTGTTTGTCCCTACTGTGATGGAGGGTTCGTTCAAGAACTTAATGAATTGCAAGGATTTGCGCCTCAACATGCCTTTCCATCATCACAGATGGGGGAGTTTCATCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGCGGAGGGGTCCTGATCCAAGGTTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGAGGGAGGTCTGGTCCTGCCCCGGGTCCTGAACAGAGTTGGGGTGTTGTTAGTTCTGGTCCTTATTTGATCTTTCACGGTCAAGTTCCTGGATTCACCTTGGCTAATGGTGGCAGTCCAAGAGGTGGTCCGAGGGGTGTTGATTTCGGTGATTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACCATGAATGAACGGCGTGGTCCACCCCCAGCTGCACGTTCTTCAATTGACGCAATGCCTACTATTAAGATCACGAGTGCGCATCTTCGCCAAGATTCACACTGTCCCGTGTGTAAAGAGAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATTTACCACACTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGTTAGTTCTCGTGGTAGTCGAAGTGGGGGTGGAAGGAACGCCAATAGTAGTGGTGACAGCGACAGCAGCTCCAGGAGCAGGGAGAGCAGCCATCAGAGCCAAGGAAGGAGACATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGTTAA 906 0.4901 MSSGATHWCYECRQPIVLGGRDVVCPYCDGGFVQELNELQGFAPQHAFPSSQMGEFHQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPGPEQSWGVVSSGPYLIFHGQVPGFTLANGGSPRGGPRGVDFGDYFMGPGLEELIEQLTMNERRGPPPAARSSIDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAREMPCNHIYHTDCIVPWLVQHNSCPVCRVELPPQGHVSSRGSRSGGGRNANSSGDSDSSSRSRESSHQSQGRRHPLSFLWPFRSSS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00742 301 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Arst7g00742 301 SMART ring_2 202 242 IPR001841 -
Arst7g00742 301 MobiDBLite consensus disorder prediction 250 301 - -
Arst7g00742 301 Pfam Ring finger domain 201 243 IPR001841 -
Arst7g00742 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Arst7g00742 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 132 247 - -
Arst7g00742 301 SUPERFAMILY RING/U-box 182 249 - -
Arst7g00742 301 CDD RING-H2_RNF126-like 202 243 - -
Arst7g00742 301 FunFam E3 ubiquitin-protein ligase RING1-like 165 249 - -
Arst7g00742 301 MobiDBLite consensus disorder prediction 252 274 - -
Arst7g00742 301 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00742 Arst-Chr7 5304475 5306843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00742 145 259 C3H Transcription Factor Family AT5G01980 42.735 2.77e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00742 K11982 - gmx:100813674 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g00742 7 5304475 5306843 Arst7g00742 7 5304475 5306843 ECH