Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00688 ATGGAAGGGTTCGGAATGACTTCGGATCTTAGCAGAACCGGTGCTGTAGAACGAGACATTGAGCAGGCTATTACTGCTTTAAAGAAAGGAGCTTACCTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCGTTCCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGCCATGTGTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGGTATCCACGGCCTGAAAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAAGTTTGGTTTAGTGGTTTAAAAGCATTAATTTCACGTAGTCATCACCGAAAATGGAGGACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTAGAACATACACCAGAAGAAGTTCTCCCATGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGGCTTCACAGTCCTTATGACAGCCCTCCTAAAAATGGTTTAGATAAAGCATTATCTGATGTGATGTTGTATGCTGTCCCACCAAAAGGTTTCTTCCCTCCAGATTCTGCAAGTGCTTCAGTCCACTCTGTGTCATCTGGAGGATCAGATAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGCGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGTACAGGTGATGGTGTTCTGGGCGGTGGGACTCATCGAGTTGGGAGTTCTTTGGGTGTAAAAATGGACTCTCTTTTTCCAAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCCTGCGGTGGACGACATGCGGCCTTAGTGACCAAACAAGGTGAAATTTTCTCTTGGGGGGAAGAATCAGGAGGTAGGCTTGGGCATGGTGTTGATTCTGATGTTCTCCATCCAAAGCTTATCGAAACTTTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACATGTGCTGTGACGCTTTCTGGTGATCTTTATACATGGGGTGATGGCACATACAATTATGGTCTTCTGGGGCATGGTAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCCTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCGTGGCACACTGCTGTCGTAACCTCTGCTGGGCAATTGTTTACTTTTGGTGATGGTACATTTGGTGTTTTGGGTCATGGAGATCGTAAAAGTGTTTCATTACCTAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTCCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTCACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCAGCCCTGGTTGAACCCAATTTCTGTCAGGTTGCTTGTGGACATAGTCTGACTGTTGCGCTTACCACCTCTGGGCATGTCTATACAATGGGTAGTCCTGTCTATGGTCAGTTGGGAAATCCTCAAGCTGATGGGAAGCTACCAAGCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATTGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACAGAAGTTTACACATGGGGTAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACAGATGACAGAAATGTCCCAACATTAGTAGAAGCATTGAAAGACAAACAGGTCAAAAGTGTTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTACATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGTTGTCGTCTTCCATTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTCTGTCATTCATGTAGCAGTAAGAAATCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGCGTCTGTGACAACTGTTTTAATAAACTAAGGAAATCTATGGAAACTGATTCTTCATCCCATTCTTCTGTGAGCAGAAGAGGAAGTATCGTTCCAGGGTCACTTGAGTTAATTGATAAGGATGATAAAATGGATTCAAGATCTCGTAGTCAACTTGCTAGGTTTTCTTCAATGGAGTCCTTGAAGCAAGTGGATAGTAGATCTTCTAAAAAAAACAAGAAGTTGGAATTCAACAGTAGTCGCGTCTCTCCTGTTCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCATCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCTCCAATATCTAGACGACCTAGTCCACCACGTTCAACTACTCCAACTCCAACACTGGGAGGTCTTACTTCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGACAGCAGGTGGAAAACCTGACTAGGAAAGCGCAACTTCAAGAAGTTGAGTTGGAAAGGACAACCAAACAGCTAAAAGATGCTATAGCAATTGCTGGAGAGGAAACTGCGAAGTGCAAAGCAGCAAAGGAAGTGATCAAATCTCTTACCGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCAGCTAGGAATGTCAAATCGCCTTCTCTTGCTTCCATTGGTTCCAATGAGCTTAGCTATGCTTCCATTGATCGATTGAATCTTCAAGCAACAAGCCCAGAAGCAGATTTAACTGGATCAAATAATCAGTTGCTTTCAAATGGATCCAGCACTGCCAGCAACCGTAGTAGTGCTGGTCACAATAAACAGAACCAGTCAGAGGTAACTAACAAAAATGGGAGCAGAACAAAGGAGAGCGAATCCCGGAGTGAGAATGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCTGGAGGCGTAATAGATCTTAAGAGAGTTCGCTTCAGGTATTAA 3189 0.4346 MEGFGMTSDLSRTGAVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPMNSPFGSNESLQKDSGDHLRLHSPYDSPPKNGLDKALSDVMLYAVPPKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSSLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIETLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNVPTLVEALKDKQVKSVACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKSMETDSSSHSSVSRRGSIVPGSLELIDKDDKMDSRSRSQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRQQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASIGSNELSYASIDRLNLQATSPEADLTGSNNQLLSNGSSTASNRSSAGHNKQNQSEVTNKNGSRTKESESRSENEWVEQDEPGVYITLTSLPGGVIDLKRVRFRY 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00688 1062 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 834 863 - -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 979 1035 - -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 789 803 - -
Arst7g00688 1062 Pfam Unstructured region between BRX_N and BRX domain 956 1024 - -
Arst7g00688 1062 Pfam Transcription factor BRX N-terminal domain 917 950 IPR027988 -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Arst7g00688 1062 SUPERFAMILY RCC1/BLIP-II 266 657 IPR009091 -
Arst7g00688 1062 ProSiteProfiles BRX domain profile. 1031 1062 IPR013591 -
Arst7g00688 1062 Pfam Transcription factor regulating root and shoot growth via Pin3 1030 1061 IPR013591 -
Arst7g00688 1062 SUPERFAMILY FYVE/PHD zinc finger 656 727 IPR011011 -
Arst7g00688 1062 FunFam Putative E3 ubiquitin-protein ligase HERC1 662 730 - -
Arst7g00688 1062 SMART fyve_4 654 723 IPR000306 GO:0046872
Arst7g00688 1062 MobiDBLite consensus disorder prediction 134 191 - -
Arst7g00688 1062 SUPERFAMILY PH domain-like 19 127 - -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 1019 1035 - -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 746 803 - -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Arst7g00688 1062 Gene3D - 241 497 IPR009091 -
Arst7g00688 1062 Gene3D - 498 667 IPR009091 -
Arst7g00688 1062 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Arst7g00688 1062 FunFam PH, RCC1 and FYVE domains-containing protein 1 238 489 - -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 979 1018 - -
Arst7g00688 1062 Coils Coil 922 942 - -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Arst7g00688 1062 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Arst7g00688 1062 Gene3D - 18 136 IPR011993 -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Arst7g00688 1062 CDD FYVE_like_SF 665 718 - -
Arst7g00688 1062 Coils Coil 866 907 - -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 499 548 IPR000408 -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 551 600 IPR000408 -
Arst7g00688 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 605 652 IPR000408 -
Arst7g00688 1062 MobiDBLite consensus disorder prediction 142 172 - -
Arst7g00688 1062 Pfam FYVE zinc finger 656 722 IPR000306 GO:0046872
Arst7g00688 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 729 IPR013083 -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Arst7g00688 1062 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Arst7g00688 1062 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Arst7g00688 1062 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Arst7g00688 1062 FunFam PH, RCC1 and FYVE domains-containing protein 1 490 661 - -
Arst7g00688 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Arst7g00688 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 942 - -
Arst7g00688 1062 CDD PH_PLC_plant-like 18 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00688 Arst-Chr7 4561156 4568143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00688 926 1060 Major Intrinsic Protein MIP AT1G31880 32.653 1.86e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00688 - - gmx:100802464 1842.4