Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00573 ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCATCAGAAGAAGATGGGAAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTCGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCGTCCAAACTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCCCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAGCAGCAGAATTTGATGCATGGGAACATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAGTAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA 765 0.4471 MELPNQAPEEGSSQHHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPVNLLDSNNHQYSRQDHTALQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00573 254 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g00573 254 Coils Coil 109 129 - -
Arst7g00573 254 MobiDBLite consensus disorder prediction 1 27 - -
Arst7g00573 254 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 Coils Coil 140 160 - -
Arst7g00573 254 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Arst7g00573 254 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 Gene3D - 32 112 IPR036879 GO:0003677|GO:0046983
Arst7g00573 254 MobiDBLite consensus disorder prediction 12 27 - -
Arst7g00573 254 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Arst7g00573 254 Coils Coil 179 208 - -
Arst7g00573 254 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 203 - -
Arst7g00573 254 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Arst7g00573 254 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g00573 254 SUPERFAMILY SRF-like 21 98 IPR036879 GO:0003677|GO:0046983
Arst7g00573 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00573 Arst-Chr7 3758939 3765354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00573 9 254 MADS-box Gene Family AT3G58780 69.048 1.09e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst7g00573 K-box 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00573 K09264 - gmx:100792224 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00859 1 8702525 8711740 Arst7g00573 7 3758939 3765354 PCT