Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00571 ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCATCAGAAGAAGATGGGAAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTCGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGCAAGAATCGTCCAAACTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCCCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAGCAGCAGAATTTGATGCATGGGAACATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAGTAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA 756 0.4497 MELPNQAPEEGSSQHHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKASAASSNTESVSEANTQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPVNLLDSNNHQYSRQDHTALQLV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00571 251 Pfam K-box region 100 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g00571 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 Coils Coil 137 157 - -
Arst7g00571 251 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst7g00571 251 MobiDBLite consensus disorder prediction 1 27 - -
Arst7g00571 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 200 - -
Arst7g00571 251 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Arst7g00571 251 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 MobiDBLite consensus disorder prediction 12 27 - -
Arst7g00571 251 FunFam MADS-box transcription factor 21 32 98 - -
Arst7g00571 251 Coils Coil 103 123 - -
Arst7g00571 251 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 Gene3D - 32 114 IPR036879 GO:0003677|GO:0046983
Arst7g00571 251 MobiDBLite consensus disorder prediction 92 113 - -
Arst7g00571 251 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Arst7g00571 251 SUPERFAMILY SRF-like 21 98 IPR036879 GO:0003677|GO:0046983
Arst7g00571 251 Coils Coil 176 205 - -
Arst7g00571 251 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00571 Arst-Chr7 3758938 3765354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00571 9 251 MADS-box Gene Family AT3G58780 68.254 2.85e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst7g00571 K-box 4.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00571 K09264 - gmx:100792224 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00860 1 8702525 8711633 Arst7g00571 7 3758938 3765354 PCT