Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00346 ATGGAATCGGATCTTGGAAAGCTCTTCATTGGGGGGATTTCATGGGACACTGATGAGGAACGCCTCAAGGAATATTTTGGGAAATTTGGTGAGGTGATAGAAGCTGTGATCATGAGGGATCGGACAACGGGTCGTGCTCGTGGATTCGGCTTTATTGTCTTTGCTGATCTTGCTGTTGCAGAAAGAGTAATTATGGATAAACATGTAATCGATGGCCGCACGGTTGAAGCAAAGAAGGCTGTTCCCAGAGATGATCAGCAAGCTATAAATAGGCAGTCTGCTAGCATACAGGGATCTCCTAGTCCTGGTCGCACGAAGAAAATCTTCGTTGGAGGTTTACCATCAACGATCACGGAAAGTGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGATTCGGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGGAAGTTGGTTGAGGTCAAGAGGGCAGTTCCCAAAGATCTTTCTCCTGGACCCAATCGGAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACAAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCGATAGGAGGCTATGGCGTAAGGATGGATGGTAGATTTAGTCCACTTTCTAGTGGTAGAAGCAGTTTTACCCCATTTGGATCTAGTGGTTATGGAATGGGAGTGAATTTGGAATCAGCATTGAGTCCAACCTATGGAGGAACTTCCAATTATGGGGGAAATATAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAATTCAAGCAGGTACACTACTCCTATTGGCTTTAGTGGGGGCAATGCAAGAAGCGACACTCTTACGAACTCAACTTCTAGGAATGTCTGGGGAAATGGTGGCCTGAATACTACGACTAATAACCCCGTCAGCCCTGGTGCGTACTTGGGATCAGGAAGTGGGGCTTTCGGTGTTTCAATTGGAAATAGTGGTACCAATTGGGGTCCATCAGTTCCAACGCAGGGTGGAGGGGCTGCTTCCGGCTATGCTACTTGGAGCAATGTTTATGCCGGTGGAGATAGTAGCATAGGATTAGGAGGAGGAGGAGGGTATGGAAGGAACAGTGGCACAAATGCGACCCAGTCCTCTACATTTGCTGCACCAAACAGTGTTTATGATGGACCCTATGGGGAGTTATACCGCAGTGGTTCTGCTTACAATGACTCTACTTGGCGGTCCGCTGCTTCTGAGGTAGATGGTTCTGGTGCATTTGGTTATGGACTTGGTGGCATTGTTTCAGATGATCCAGTGAAGAGTTCTGAGGGTTTTATTGGGAACTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1440 0.4493 MESDLGKLFIGGISWDTDEERLKEYFGKFGEVIEAVIMRDRTTGRARGFGFIVFADLAVAERVIMDKHVIDGRTVEAKKAVPRDDQQAINRQSASIQGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKLVEVKRAVPKDLSPGPNRSPLIGYNYGLNRTSSYLNSYAQGFNINPIGGYGVRMDGRFSPLSSGRSSFTPFGSSGYGMGVNLESALSPTYGGTSNYGGNIGYGRIFSPFYSGNSSRYTTPIGFSGGNARSDTLTNSTSRNVWGNGGLNTTTNNPVSPGAYLGSGSGAFGVSIGNSGTNWGPSVPTQGGGAASGYATWSNVYAGGDSSIGLGGGGGYGRNSGTNATQSSTFAAPNSVYDGPYGELYRSGSAYNDSTWRSAASEVDGSGAFGYGLGGIVSDDPVKSSEGFIGNYNVTSRQSNRGIAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00346 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Arst7g00346 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Arst7g00346 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Arst7g00346 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Arst7g00346 479 Gene3D - 6 85 IPR012677 -
Arst7g00346 479 MobiDBLite consensus disorder prediction 86 102 - -
Arst7g00346 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Arst7g00346 479 CDD RRM2_Hrp1p 107 184 - -
Arst7g00346 479 Gene3D - 86 193 IPR012677 -
Arst7g00346 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Arst7g00346 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Arst7g00346 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 167 IPR000504 GO:0003723
Arst7g00346 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Arst7g00346 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Arst7g00346 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Arst7g00346 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Arst7g00346 479 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00346 Arst-Chr7 2268476 2272295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00346 105 182 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 3.11e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00346 K14411 - gmx:100788515 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g00346 7 2268476 2272295 Arst7g00346 7 2268476 2272295 ECH
Arst1g00345 1 3181001 3185454 Arst7g00346 7 2268476 2272295 PCT